Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5□□□□□ -1.61
COL3A1P02461 ANKRD36BP1-202ENST00000604892 1417 ntBASIC5□□□□□ -1.61
COL3A1P02461 HMGB1P51-201ENST00000605166 638 ntBASIC5□□□□□ -1.61
COL3A1P02461 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5□□□□□ -1.61
COL3A1P02461 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5□□□□□ -1.61
COL3A1P02461 AL359314.1-201ENST00000616913 261 ntBASIC5□□□□□ -1.61
COL3A1P02461 AC090617.9-201ENST00000623751 147 ntBASIC5□□□□□ -1.61
COL3A1P02461 AC244258.1-201ENST00000637553 1071 ntBASIC5□□□□□ -1.61
COL3A1P02461 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
COL3A1P02461 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.99□□□□□ -1.61
COL3A1P02461 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.99□□□□□ -1.61
COL3A1P02461 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.99□□□□□ -1.61
COL3A1P02461 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.99□□□□□ -1.61
COL3A1P02461 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL3A1P02461 Z86062.1-201ENST00000406773 777 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.99□□□□□ -1.61
COL3A1P02461 MTND4P3-201ENST00000417829 541 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AC008280.1-201ENST00000418851 412 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 MRPS10P2-201ENST00000431226 381 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.99□□□□□ -1.61
COL3A1P02461 AC092393.1-201ENST00000439625 742 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 YWHAQP9-201ENST00000445891 512 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 RPL23AP12-201ENST00000467573 473 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.99□□□□□ -1.61
COL3A1P02461 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.99□□□□□ -1.61
COL3A1P02461 RNU1-95P-201ENST00000516357 160 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 RNA5SP164-201ENST00000516533 110 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 RNU1-128P-201ENST00000516704 160 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 RNU6-232P-201ENST00000517144 64 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.99□□□□□ -1.61
COL3A1P02461 AC109635.3-201ENST00000529536 185 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 EEF1B2P4-201ENST00000551398 348 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.99□□□□□ -1.61
COL3A1P02461 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.99□□□□□ -1.61
COL3A1P02461 AL354760.1-201ENST00000608357 643 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AC073114.1-201ENST00000612027 490 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AL450489.1-201ENST00000612071 468 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 AL139089.1-201ENST00000620372 975 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 ZNF663P-202ENST00000641770 1131 ntBASIC4.99□□□□□ -1.61
COL3A1P02461 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL3A1P02461 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL3A1P02461 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.98□□□□□ -1.61
COL3A1P02461 ANKRD36P1-201ENST00000344424 659 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 Y_RNA.3-201ENST00000362331 103 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 SNORA62.3-201ENST00000365110 153 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL3A1P02461 AC092647.1-201ENST00000420654 287 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 AC019178.2-201ENST00000423595 505 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.98□□□□□ -1.61
COL3A1P02461 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 AC097262.1-201ENST00000452559 548 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 AC008280.2-201ENST00000455473 307 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.98□□□□□ -1.61
COL3A1P02461 AC010469.1-201ENST00000463864 576 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 BZW1P2-201ENST00000473537 826 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL3A1P02461 AC109464.2-201ENST00000510242 943 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.98□□□□□ -1.61
COL3A1P02461 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.98□□□□□ -1.61
COL3A1P02461 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.98□□□□□ -1.61
COL3A1P02461 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.98□□□□□ -1.61
COL3A1P02461 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.98□□□□□ -1.61
COL3A1P02461 MTND3P19-201ENST00000603825 345 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 AC010975.3-201ENST00000618727 978 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL3A1P02461 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.98□□□□□ -1.61
COL3A1P02461 AP000553.6-201ENST00000641242 118 ntBASIC4.98□□□□□ -1.61
COL3A1P02461 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
COL3A1P02461 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.98□□□□□ -1.61
COL3A1P02461 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL3A1P02461 CASC19-284ENST00000642142 1868 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL3A1P02461 AC012020.1-201ENST00000624541 1728 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
COL3A1P02461 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL3A1P02461 AL160275.2-201ENST00000412010 394 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 RANP4-201ENST00000413361 655 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 OR6C64P-201ENST00000419708 825 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 BX119904.1-201ENST00000432026 348 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 ATP5HP2-201ENST00000433885 485 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 MTCO1P52-201ENST00000433928 531 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.97□□□□□ -1.61
COL3A1P02461 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.97□□□□□ -1.61
COL3A1P02461 Z99127.2-201ENST00000441426 334 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.97□□□□□ -1.61
COL3A1P02461 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.97□□□□□ -1.61
COL3A1P02461 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL3A1P02461 MRPL35P4-201ENST00000453682 566 ntBASIC4.97□□□□□ -1.61
COL3A1P02461 MTCYBP1-201ENST00000454315 1119 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms