Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 MTND4LP32-201ENST00000636111 270 ntBASIC5.54□□□□□ -1.52
SSU72Q9NP77 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.54□□□□□ -1.52
SSU72Q9NP77 HSPA8P18-201ENST00000439846 1928 ntBASIC5.54□□□□□ -1.52
SSU72Q9NP77 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.54□□□□□ -1.52
SSU72Q9NP77 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 LARP1BP1-201ENST00000506036 1359 ntBASIC5.54□□□□□ -1.52
SSU72Q9NP77 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 AC005261.2-201ENST00000593427 4258 ntBASIC5.54□□□□□ -1.52
SSU72Q9NP77 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SSU72Q9NP77 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 RNY1P12-201ENST00000364251 105 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 Y_RNA.231-201ENST00000364358 102 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 MIR431-201ENST00000385266 114 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL451054.2-201ENST00000420896 202 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 HSPE1P1-201ENST00000421494 318 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC018630.2-202ENST00000422992 927 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 RPL34P6-201ENST00000432390 345 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 HSPE1P28-201ENST00000443139 211 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC079781.2-201ENST00000446424 169 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL133244.1-201ENST00000456007 258 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 RN7SL254P-201ENST00000460609 284 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 GMFBP1-201ENST00000467831 427 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL122020.1-201ENST00000472287 459 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AP000893.1-201ENST00000474462 794 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC055855.1-201ENST00000489563 579 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC009120.1-201ENST00000493458 473 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 RN7SL57P-201ENST00000493687 290 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC018797.3-201ENST00000513388 1241 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 SNORD27.1-201ENST00000516319 72 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 SCARNA18.1-201ENST00000516330 83 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 RN7SKP96-201ENST00000516948 297 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 RNU6-410P-201ENST00000517006 107 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 PRPF19P1-201ENST00000584766 898 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 OR2L1P-202ENST00000641567 1023 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC010266.2-201ENST00000564741 3255 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 AC104623.2-202ENST00000623477 4002 ntBASIC5.53□□□□□ -1.52
SSU72Q9NP77 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SSU72Q9NP77 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
SSU72Q9NP77 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.52□□□□□ -1.53
SSU72Q9NP77 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SSU72Q9NP77 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
SSU72Q9NP77 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SSU72Q9NP77 AP005432.1-201ENST00000580891 3485 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.52□□□□□ -1.53
SSU72Q9NP77 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.52□□□□□ -1.53
SSU72Q9NP77 LINC01963-201ENST00000562038 3148 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SSU72Q9NP77 AL161781.1-201ENST00000354277 403 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SSU72Q9NP77 RNA5SP500-201ENST00000364486 119 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 Y_RNA.301-201ENST00000364990 103 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 Y_RNA.459-201ENST00000384251 102 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 RNU6-574P-201ENST00000384265 107 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 RPL21P67-201ENST00000402896 478 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 MRPL53P1-201ENST00000414323 319 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.52□□□□□ -1.53
SSU72Q9NP77 ERLEC1P1-201ENST00000433806 578 ntBASIC5.52□□□□□ -1.53
SSU72Q9NP77 LYPLA1P1-201ENST00000434514 622 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms