Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 AL512353.2-201ENST00000448759 1962 ntBASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 AL133373.2-201ENST00000623187 2828 ntBASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 AC010980.2-201ENST00000587099 1412 ntBASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 IRX1P1-201ENST00000438849 1838 ntBASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 BICD1-207ENST00000551848 1962 ntBASIC18.72■□□□□ 0.59
CCDC28BQ9BUN5 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28BQ9BUN5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 AC137761.2-201ENST00000561729 223 ntBASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 AC145350.3-201ENST00000569033 163 ntBASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 OR10C1-204ENST00000622521 1039 ntBASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 AC104417.2-201ENST00000562989 1793 ntBASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC28BQ9BUN5 MKRN4P-201ENST00000444706 1521 ntBASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 AC034268.1-201ENST00000441047 882 ntBASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 BID-214ENST00000617586 542 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC28BQ9BUN5 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms