Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
C9orf40Q8IXQ3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
C9orf40Q8IXQ3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
C9orf40Q8IXQ3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
C9orf40Q8IXQ3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.81■□□□□ 0.44
C9orf40Q8IXQ3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
C9orf40Q8IXQ3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 BX088651.1-201ENST00000540551 451 ntBASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 AP000692.2-201ENST00000608391 879 ntBASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
C9orf40Q8IXQ3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.79■□□□□ 0.44
C9orf40Q8IXQ3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 AL390955.1-201ENST00000428694 934 ntBASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
C9orf40Q8IXQ3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 MIR1238-201ENST00000408483 83 ntBASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 AC097488.1-201ENST00000507834 756 ntBASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 FITM1-202ENST00000559294 800 ntBASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
C9orf40Q8IXQ3 KRT8P11-201ENST00000409686 1436 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms