Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
KRT39Q6A163 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.82■□□□□ 0.92
KRT39Q6A163 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
KRT39Q6A163 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 UBE2SP1-201ENST00000450587 669 ntBASIC20.82■□□□□ 0.92
KRT39Q6A163 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.82■□□□□ 0.92
KRT39Q6A163 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.82■□□□□ 0.92
KRT39Q6A163 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.82■□□□□ 0.92
KRT39Q6A163 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 TMEM191A-211ENST00000637163 1067 ntBASIC20.82■□□□□ 0.92
KRT39Q6A163 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
KRT39Q6A163 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
KRT39Q6A163 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
KRT39Q6A163 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.82■□□□□ 0.92
KRT39Q6A163 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT39Q6A163 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
KRT39Q6A163 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 KSR1P1-201ENST00000446298 240 ntBASIC20.81■□□□□ 0.92
KRT39Q6A163 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.81■□□□□ 0.92
KRT39Q6A163 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT39Q6A163 AF186192.3-201ENST00000583427 947 ntBASIC20.81■□□□□ 0.92
KRT39Q6A163 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
KRT39Q6A163 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT39Q6A163 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT39Q6A163 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT39Q6A163 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.8■□□□□ 0.92
KRT39Q6A163 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
KRT39Q6A163 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 RPS2P4-201ENST00000476944 856 ntBASIC20.8■□□□□ 0.92
KRT39Q6A163 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
KRT39Q6A163 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.8■□□□□ 0.92
KRT39Q6A163 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
KRT39Q6A163 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT39Q6A163 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT39Q6A163 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
KRT39Q6A163 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT39Q6A163 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
KRT39Q6A163 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT39Q6A163 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT39Q6A163 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
KRT39Q6A163 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT39Q6A163 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.79■□□□□ 0.92
KRT39Q6A163 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.79■□□□□ 0.92
KRT39Q6A163 AC131212.4-201ENST00000623606 975 ntBASIC20.79■□□□□ 0.92
KRT39Q6A163 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
KRT39Q6A163 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT39Q6A163 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT39Q6A163 AL135905.2-201ENST00000584934 1404 ntBASIC20.78■□□□□ 0.92
KRT39Q6A163 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
KRT39Q6A163 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
KRT39Q6A163 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 AC004980.1-204ENST00000429707 299 ntBASIC20.78■□□□□ 0.92
KRT39Q6A163 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT39Q6A163 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms