Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
COL7A1Q02388 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL7A1Q02388 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.81□□□□□ -0.2
COL7A1Q02388 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL7A1Q02388 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC13.81□□□□□ -0.2
COL7A1Q02388 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL7A1Q02388 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL7A1Q02388 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.81□□□□□ -0.2
COL7A1Q02388 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC13.81□□□□□ -0.2
COL7A1Q02388 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.81□□□□□ -0.2
COL7A1Q02388 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 TSPY22P-201ENST00000427496 604 ntBASIC13.81□□□□□ -0.2
COL7A1Q02388 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.81□□□□□ -0.2
COL7A1Q02388 SAPCD2P3-201ENST00000455031 850 ntBASIC13.81□□□□□ -0.2
COL7A1Q02388 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.81□□□□□ -0.2
COL7A1Q02388 AC091304.2-201ENST00000564639 760 ntBASIC13.81□□□□□ -0.2
COL7A1Q02388 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL7A1Q02388 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.81□□□□□ -0.2
COL7A1Q02388 FEM1AP1-201ENST00000431297 1995 ntBASIC13.81□□□□□ -0.2
COL7A1Q02388 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC13.8□□□□□ -0.2
COL7A1Q02388 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.8□□□□□ -0.2
COL7A1Q02388 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.8□□□□□ -0.2
COL7A1Q02388 AP002414.4-201ENST00000589764 1148 ntBASIC13.8□□□□□ -0.2
COL7A1Q02388 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.8□□□□□ -0.2
COL7A1Q02388 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC13.8□□□□□ -0.2
COL7A1Q02388 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
COL7A1Q02388 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.8□□□□□ -0.2
COL7A1Q02388 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC13.8□□□□□ -0.2
COL7A1Q02388 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL7A1Q02388 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL7A1Q02388 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL7A1Q02388 STK25-234ENST00000535007 2459 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.8□□□□□ -0.2
COL7A1Q02388 TSSC2-201ENST00000450217 709 ntBASIC13.8□□□□□ -0.2
COL7A1Q02388 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.8□□□□□ -0.2
COL7A1Q02388 SEC1P-202ENST00000473944 940 ntBASIC13.8□□□□□ -0.2
COL7A1Q02388 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL7A1Q02388 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
COL7A1Q02388 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC13.79□□□□□ -0.2
COL7A1Q02388 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC13.79□□□□□ -0.2
COL7A1Q02388 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
COL7A1Q02388 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.79□□□□□ -0.2
COL7A1Q02388 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC13.79□□□□□ -0.2
COL7A1Q02388 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC13.79□□□□□ -0.2
COL7A1Q02388 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.79□□□□□ -0.2
COL7A1Q02388 AL121912.1-201ENST00000603683 238 ntBASIC13.79□□□□□ -0.2
COL7A1Q02388 AL773604.1-201ENST00000617417 272 ntBASIC13.79□□□□□ -0.2
COL7A1Q02388 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL7A1Q02388 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 AP000867.3-201ENST00000524675 377 ntBASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms