Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.21■□□□□ 0.99
CLCN3P51790 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.21■□□□□ 0.99
CLCN3P51790 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CLCN3P51790 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CLCN3P51790 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.2■□□□□ 0.99
CLCN3P51790 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.2■□□□□ 0.98
CLCN3P51790 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.2■□□□□ 0.98
CLCN3P51790 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CLCN3P51790 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.2■□□□□ 0.98
CLCN3P51790 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.2■□□□□ 0.98
CLCN3P51790 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CLCN3P51790 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.2■□□□□ 0.98
CLCN3P51790 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.2■□□□□ 0.98
CLCN3P51790 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCN3P51790 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.2■□□□□ 0.98
CLCN3P51790 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.2■□□□□ 0.98
CLCN3P51790 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
CLCN3P51790 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.19■□□□□ 0.98
CLCN3P51790 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.19■□□□□ 0.98
CLCN3P51790 DUX4L26-201ENST00000489078 1255 ntBASIC21.19■□□□□ 0.98
CLCN3P51790 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CLCN3P51790 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.19■□□□□ 0.98
CLCN3P51790 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.19■□□□□ 0.98
CLCN3P51790 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CLCN3P51790 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.19■□□□□ 0.98
CLCN3P51790 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
CLCN3P51790 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCN3P51790 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CLCN3P51790 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLCN3P51790 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CLCN3P51790 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CLCN3P51790 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.18■□□□□ 0.98
CLCN3P51790 AC125437.2-201ENST00000625180 2167 ntBASIC21.18■□□□□ 0.98
CLCN3P51790 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.18■□□□□ 0.98
CLCN3P51790 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.18■□□□□ 0.98
CLCN3P51790 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.18■□□□□ 0.98
CLCN3P51790 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.18■□□□□ 0.98
CLCN3P51790 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
CLCN3P51790 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCN3P51790 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.18■□□□□ 0.98
CLCN3P51790 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
CLCN3P51790 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
CLCN3P51790 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.17■□□□□ 0.98
CLCN3P51790 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.17■□□□□ 0.98
CLCN3P51790 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
CLCN3P51790 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLCN3P51790 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLCN3P51790 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLCN3P51790 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.17■□□□□ 0.98
CLCN3P51790 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLCN3P51790 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.17■□□□□ 0.98
CLCN3P51790 PRSS44-201ENST00000515154 1146 ntBASIC21.17■□□□□ 0.98
CLCN3P51790 AL353719.1-201ENST00000566847 864 ntBASIC21.17■□□□□ 0.98
CLCN3P51790 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLCN3P51790 AC010653.2-201ENST00000623505 997 ntBASIC21.17■□□□□ 0.98
CLCN3P51790 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.17■□□□□ 0.98
CLCN3P51790 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.17■□□□□ 0.98
CLCN3P51790 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLCN3P51790 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
CLCN3P51790 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.16■□□□□ 0.98
CLCN3P51790 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 TSPY17P-201ENST00000450329 467 ntBASIC21.16■□□□□ 0.98
CLCN3P51790 CA15P1-201ENST00000481698 905 ntBASIC21.16■□□□□ 0.98
CLCN3P51790 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
CLCN3P51790 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CLCN3P51790 AL590326.2-201ENST00000625139 305 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms