Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TSPY21P-201ENST00000433481 731 ntBASIC21.74■■□□□ 1.07
CIITAP33076 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.74■■□□□ 1.07
CIITAP33076 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.74■■□□□ 1.07
CIITAP33076 PRSS44-201ENST00000515154 1146 ntBASIC21.74■■□□□ 1.07
CIITAP33076 CKBP1-201ENST00000565489 1086 ntBASIC21.74■■□□□ 1.07
CIITAP33076 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.74■■□□□ 1.07
CIITAP33076 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
CIITAP33076 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CIITAP33076 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.74■■□□□ 1.07
CIITAP33076 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.74■■□□□ 1.07
CIITAP33076 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.74■■□□□ 1.07
CIITAP33076 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
CIITAP33076 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.74■■□□□ 1.07
CIITAP33076 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.74■■□□□ 1.07
CIITAP33076 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.74■■□□□ 1.07
CIITAP33076 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CIITAP33076 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.73■■□□□ 1.07
CIITAP33076 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CIITAP33076 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.73■■□□□ 1.07
CIITAP33076 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.73■■□□□ 1.07
CIITAP33076 TSPY23P-201ENST00000440136 739 ntBASIC21.73■■□□□ 1.07
CIITAP33076 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.73■■□□□ 1.07
CIITAP33076 SLC25A1P4-201ENST00000567977 778 ntBASIC21.73■■□□□ 1.07
CIITAP33076 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.73■■□□□ 1.07
CIITAP33076 AC012306.2-201ENST00000609350 630 ntBASIC21.73■■□□□ 1.07
CIITAP33076 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CIITAP33076 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.73■■□□□ 1.07
CIITAP33076 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
CIITAP33076 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CIITAP33076 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CIITAP33076 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.72■■□□□ 1.07
CIITAP33076 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.72■■□□□ 1.07
CIITAP33076 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CIITAP33076 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CIITAP33076 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 CRYGFP-201ENST00000418459 633 ntBASIC21.72■■□□□ 1.07
CIITAP33076 MFAP1P1-201ENST00000442257 1255 ntBASIC21.72■■□□□ 1.07
CIITAP33076 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.72■■□□□ 1.07
CIITAP33076 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.72■■□□□ 1.07
CIITAP33076 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.72■■□□□ 1.07
CIITAP33076 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.72■■□□□ 1.07
CIITAP33076 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CIITAP33076 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 CYP2D8P-201ENST00000433633 1490 ntBASIC21.71■■□□□ 1.07
CIITAP33076 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 AC093484.2-201ENST00000580996 2166 ntBASIC21.71■■□□□ 1.07
CIITAP33076 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.71■■□□□ 1.07
CIITAP33076 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.71■■□□□ 1.07
CIITAP33076 AC010947.1-201ENST00000623454 693 ntBASIC21.71■■□□□ 1.07
CIITAP33076 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CIITAP33076 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.71■■□□□ 1.07
CIITAP33076 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CIITAP33076 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.71■■□□□ 1.07
CIITAP33076 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.71■■□□□ 1.07
CIITAP33076 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CIITAP33076 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.7■■□□□ 1.06
CIITAP33076 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.7■■□□□ 1.06
CIITAP33076 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CIITAP33076 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CIITAP33076 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.7■■□□□ 1.06
CIITAP33076 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms