Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL8A1P27658 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL8A1P27658 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.83■□□□□ 0.28
COL8A1P27658 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.83■□□□□ 0.28
COL8A1P27658 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL8A1P27658 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL8A1P27658 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL8A1P27658 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.83■□□□□ 0.28
COL8A1P27658 SLC25A6P4-201ENST00000586535 553 ntBASIC16.83■□□□□ 0.28
COL8A1P27658 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL8A1P27658 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.83■□□□□ 0.28
COL8A1P27658 BX119927.1-201ENST00000636596 1552 ntBASIC16.83■□□□□ 0.28
COL8A1P27658 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL8A1P27658 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL8A1P27658 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL8A1P27658 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.82■□□□□ 0.28
COL8A1P27658 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.82■□□□□ 0.28
COL8A1P27658 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 NUS1P1-201ENST00000446295 882 ntBASIC16.82■□□□□ 0.28
COL8A1P27658 CA15P1-201ENST00000481698 905 ntBASIC16.82■□□□□ 0.28
COL8A1P27658 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.82■□□□□ 0.28
COL8A1P27658 AC011498.5-201ENST00000592027 486 ntBASIC16.82■□□□□ 0.28
COL8A1P27658 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
COL8A1P27658 AL121672.3-201ENST00000608644 468 ntBASIC16.82■□□□□ 0.28
COL8A1P27658 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC16.82■□□□□ 0.28
COL8A1P27658 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL8A1P27658 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
COL8A1P27658 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
COL8A1P27658 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.81■□□□□ 0.28
COL8A1P27658 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL8A1P27658 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL8A1P27658 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 MRPL3P1-201ENST00000400109 1033 ntBASIC16.81■□□□□ 0.28
COL8A1P27658 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
COL8A1P27658 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.81■□□□□ 0.28
COL8A1P27658 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.81■□□□□ 0.28
COL8A1P27658 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
COL8A1P27658 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL8A1P27658 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL8A1P27658 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
COL8A1P27658 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.8■□□□□ 0.28
COL8A1P27658 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 TSPY19P-201ENST00000418461 509 ntBASIC16.8■□□□□ 0.28
COL8A1P27658 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 TSPY18P-201ENST00000441642 509 ntBASIC16.8■□□□□ 0.28
COL8A1P27658 AP002469.2-201ENST00000531724 424 ntBASIC16.8■□□□□ 0.28
COL8A1P27658 AC091304.2-201ENST00000564639 760 ntBASIC16.8■□□□□ 0.28
COL8A1P27658 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.8■□□□□ 0.28
COL8A1P27658 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.8■□□□□ 0.28
COL8A1P27658 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.8■□□□□ 0.28
COL8A1P27658 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL8A1P27658 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms