Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 HCG4P8-203ENST00000443049 980 ntBASIC24.26■■□□□ 1.47
NPHP1O15259 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC24.26■■□□□ 1.47
NPHP1O15259 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.26■■□□□ 1.47
NPHP1O15259 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
NPHP1O15259 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.26■■□□□ 1.47
NPHP1O15259 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
NPHP1O15259 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.25■■□□□ 1.47
NPHP1O15259 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.25■■□□□ 1.47
NPHP1O15259 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 AC138932.1-201ENST00000534164 6830 ntBASIC24.25■■□□□ 1.47
NPHP1O15259 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
NPHP1O15259 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.25■■□□□ 1.47
NPHP1O15259 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 NME1-207ENST00000480143 964 ntTSL 2 BASIC24.25■■□□□ 1.47
NPHP1O15259 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.25■■□□□ 1.47
NPHP1O15259 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC24.25■■□□□ 1.47
NPHP1O15259 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
NPHP1O15259 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC24.25■■□□□ 1.47
NPHP1O15259 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
NPHP1O15259 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC24.25■■□□□ 1.47
NPHP1O15259 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC24.25■■□□□ 1.47
NPHP1O15259 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC24.25■■□□□ 1.47
NPHP1O15259 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
NPHP1O15259 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NPHP1O15259 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC24.24■■□□□ 1.47
NPHP1O15259 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
NPHP1O15259 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
NPHP1O15259 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
NPHP1O15259 VENTXP5-201ENST00000523979 775 ntBASIC24.24■■□□□ 1.47
NPHP1O15259 CKBP1-201ENST00000565489 1086 ntBASIC24.24■■□□□ 1.47
NPHP1O15259 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
NPHP1O15259 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.24■■□□□ 1.47
NPHP1O15259 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
NPHP1O15259 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
NPHP1O15259 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
NPHP1O15259 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NPHP1O15259 Telomerase-vert.1-201ENST00000363312 438 ntBASIC24.23■■□□□ 1.47
NPHP1O15259 AP000523.1-201ENST00000398242 1049 ntBASIC24.23■■□□□ 1.47
NPHP1O15259 DAP-202ENST00000432074 1048 ntTSL 2 BASIC24.23■■□□□ 1.47
NPHP1O15259 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.23■■□□□ 1.47
NPHP1O15259 GLRB-205ENST00000512619 728 ntTSL 3 BASIC24.23■■□□□ 1.47
NPHP1O15259 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC24.23■■□□□ 1.47
NPHP1O15259 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC24.23■■□□□ 1.47
NPHP1O15259 ETFA-216ENST00000560726 942 ntTSL 3 BASIC24.23■■□□□ 1.47
NPHP1O15259 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.23■■□□□ 1.47
NPHP1O15259 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24.23■■□□□ 1.47
NPHP1O15259 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC24.23■■□□□ 1.47
NPHP1O15259 AC005332.1-201ENST00000577698 1310 ntBASIC24.23■■□□□ 1.47
NPHP1O15259 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
NPHP1O15259 KRT8P45-201ENST00000414328 1447 ntBASIC24.23■■□□□ 1.47
NPHP1O15259 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NPHP1O15259 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC24.23■■□□□ 1.47
NPHP1O15259 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC24.23■■□□□ 1.47
NPHP1O15259 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC24.23■■□□□ 1.47
NPHP1O15259 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
NPHP1O15259 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC24.23■■□□□ 1.47
NPHP1O15259 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NPHP1O15259 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC24.23■■□□□ 1.47
NPHP1O15259 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NPHP1O15259 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
NPHP1O15259 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NPHP1O15259 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
NPHP1O15259 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.22■■□□□ 1.47
NPHP1O15259 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
NPHP1O15259 MOK-225ENST00000522867 1883 ntTSL 5 BASIC24.22■■□□□ 1.47
NPHP1O15259 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NPHP1O15259 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
NPHP1O15259 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
NPHP1O15259 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC24.22■■□□□ 1.47
NPHP1O15259 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NPHP1O15259 AC069148.1-201ENST00000608741 768 ntBASIC24.22■■□□□ 1.47
NPHP1O15259 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC24.22■■□□□ 1.47
NPHP1O15259 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
NPHP1O15259 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
NPHP1O15259 CD37-204ENST00000535669 1674 ntTSL 2 BASIC24.21■■□□□ 1.47
NPHP1O15259 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.21■■□□□ 1.47
NPHP1O15259 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.21■■□□□ 1.47
NPHP1O15259 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
NPHP1O15259 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms