Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPS3AP9-201ENST00000417027 792 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC096632.1-201ENST00000427395 310 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 Z74696.2-201ENST00000436514 498 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL162591.2-201ENST00000449634 317 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RNU7-136P-201ENST00000458819 69 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 OR9M1P-201ENST00000459641 921 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC087879.1-201ENST00000474343 374 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC073073.1-201ENST00000493920 463 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC096751.1-202ENST00000502691 1067 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 TMEM251P1-201ENST00000503717 318 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RFPL4AP5-201ENST00000514977 504 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC104986.1-201ENST00000517978 436 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC074029.1-201ENST00000552531 1044 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 HSPE1P3-201ENST00000559254 309 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL133457.1-201ENST00000564251 987 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AP003465.2-201ENST00000602571 373 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC073091.2-201ENST00000603205 907 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC015871.2-201ENST00000603605 948 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC091805.2-201ENST00000603848 235 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL133338.2-201ENST00000604292 736 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 NDUFA8P1-201ENST00000605525 367 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC008498.1-201ENST00000613012 531 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC083809.1-201ENST00000615051 472 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AC027807.2-201ENST00000616099 408 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 U6.101-201ENST00000637707 76 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 ADAM5-202ENST00000399789 1942 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 RPL32P3-201ENST00000359025 275 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 Y_RNA.41-201ENST00000362646 102 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 MIR129-1-201ENST00000384972 72 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 ARF4P3-201ENST00000397387 509 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AL023807.1-201ENST00000407932 359 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 RN7SKP56-201ENST00000410513 331 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 RNU2-66P-201ENST00000410650 161 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC140479.3-201ENST00000418944 1126 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 RPL21P32-201ENST00000419877 477 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 CYCSP24-201ENST00000445119 316 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC239367.2-201ENST00000447309 705 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 MTCO1P27-201ENST00000448269 226 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC026410.2-201ENST00000460281 156 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 RPS23P7-201ENST00000466210 444 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC021678.1-201ENST00000505195 936 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 FABP5P5-201ENST00000515537 406 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AP003392.2-201ENST00000527269 208 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 LSM6P2-201ENST00000552208 177 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC245505.1-201ENST00000556398 224 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 MIR4660-201ENST00000583549 74 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 MAGOH2P-202ENST00000584384 429 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC005771.1-201ENST00000585581 349 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 BNIP3P23-201ENST00000599655 511 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 152.4 ms