Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 AC118273.1-201ENST00000525324 3006 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 RPL7P26-201ENST00000333817 754 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AL136116.1-201ENST00000403591 381 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 NPM1P38-201ENST00000403835 865 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AC087499.2-201ENST00000432861 149 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 RPS26P15-201ENST00000488067 348 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 CR381670.1-201ENST00000624291 1693 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 OR1S2-201ENST00000302592 978 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AL161781.1-201ENST00000354277 403 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AC022795.1-201ENST00000473808 480 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
VPS13AQ96RL7 AC015917.1-201ENST00000579654 510 ntBASIC2.84□□□□□ -1.95
VPS13AQ96RL7 TOPORSLP1-201ENST00000467693 2102 ntBASIC2.84□□□□□ -1.96
VPS13AQ96RL7 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 AC004014.2-201ENST00000623718 5122 ntBASIC2.84□□□□□ -1.96
VPS13AQ96RL7 HSPE1P8-201ENST00000406997 288 ntBASIC2.84□□□□□ -1.96
VPS13AQ96RL7 MTND2P25-201ENST00000449028 610 ntBASIC2.84□□□□□ -1.96
VPS13AQ96RL7 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 RN7SL499P-201ENST00000481141 276 ntBASIC2.84□□□□□ -1.96
VPS13AQ96RL7 RNA5SP458-201ENST00000516188 119 ntBASIC2.84□□□□□ -1.96
VPS13AQ96RL7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC2.84□□□□□ -1.96
VPS13AQ96RL7 MAPK10-322ENST00000641485 4530 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 MTCO1P39-201ENST00000426148 480 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 UQCRHP3-201ENST00000451503 251 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 AC107934.2-201ENST00000518653 310 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 AP000859.1-201ENST00000525536 307 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 AP005262.1-201ENST00000582646 997 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 AC009237.17-201ENST00000618111 748 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 MIR489-201ENST00000384923 84 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 RNA5SP39-201ENST00000411245 120 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 RNA5SP148-201ENST00000516527 94 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 RNU4ATAC6P-201ENST00000516592 126 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 SNORA31.21-201ENST00000517180 77 ntBASIC2.83□□□□□ -1.96
VPS13AQ96RL7 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS13AQ96RL7 SNORD114-30-201ENST00000364448 72 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 RNA5SP104-201ENST00000410989 118 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 JKAMPP1-201ENST00000413804 919 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 MRPS18BP2-201ENST00000434310 759 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AL162389.1-201ENST00000449233 177 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AP002770.2-201ENST00000543613 532 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AL442163.2-201ENST00000553912 710 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 Y_RNA.796-201ENST00000364268 102 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 Y_RNA.799-201ENST00000364992 102 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 PARD3-204ENST00000374768 799 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC011242.1-201ENST00000433596 1158 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 HMGN2P23-201ENST00000456759 269 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 RNU6-548P-201ENST00000517083 115 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 MIR5047-201ENST00000579212 100 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC015813.4-201ENST00000610469 179 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 MIR486-1-201ENST00000612171 68 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 MIR448-201ENST00000362131 111 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 Y_RNA.164-201ENST00000363709 102 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AC012123.2-201ENST00000485809 248 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 TCP11X3P-202ENST00000514289 1254 ntBASIC2.82□□□□□ -1.96
VPS13AQ96RL7 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS13AQ96RL7 PISRT1-201ENST00000626175 531 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms