Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 HIGD1AP10-201ENST00000527837 282 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AP003385.6-201ENST00000531603 374 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL136520.1-202ENST00000555494 763 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC025884.1-201ENST00000556034 378 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL590282.1-201ENST00000610379 1136 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC083809.1-201ENST00000615051 472 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC112484.5-201ENST00000624189 228 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 MIR492-201ENST00000638676 116 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC132825.7-201ENST00000638744 335 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS39Q96JC1 MTND4P10-201ENST00000446199 1363 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
VPS39Q96JC1 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.84□□□□□ -1.8
VPS39Q96JC1 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
VPS39Q96JC1 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 RNA5SP295-201ENST00000362655 121 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AL022722.2-201ENST00000402519 180 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 RNU6-77P-201ENST00000410554 91 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 BMS1P19-201ENST00000433925 393 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 SETP5-201ENST00000437270 562 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC007537.2-201ENST00000472093 511 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 MTCO3P35-201ENST00000485582 781 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC093267.1-201ENST00000489176 961 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 HMGB1P22-201ENST00000505315 124 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC027338.1-201ENST00000514840 825 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 RNA5SP164-201ENST00000516533 110 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 RN7SKP209-201ENST00000516888 304 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 OR4R2P-201ENST00000530815 597 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 OR8K4P-201ENST00000534608 872 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AL137849.1-201ENST00000604767 169 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 HSPE1P14-201ENST00000605812 302 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC016542.1-201ENST00000608259 493 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 MIR6867-201ENST00000610636 67 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC138915.3-201ENST00000562908 1389 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 RLIMP1-201ENST00000339626 1680 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
VPS39Q96JC1 AC091152.2-201ENST00000591628 2569 ntBASIC3.83□□□□□ -1.8
VPS39Q96JC1 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS39Q96JC1 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC008432.1-201ENST00000615912 1320 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS39Q96JC1 SNORA70.2-201ENST00000364506 135 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC068538.1-201ENST00000376856 336 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 U1.1-201ENST00000384101 164 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 RNU6-441P-201ENST00000384545 106 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 RPL21P65-201ENST00000406094 466 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL583834.1-201ENST00000406943 343 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 RPL21P109-201ENST00000422213 475 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 USP9YP31-201ENST00000431405 881 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 Z74696.2-201ENST00000436514 498 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 RPS7P7-201ENST00000463499 571 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC108941.1-201ENST00000502853 530 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC008628.1-201ENST00000508663 265 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 MTCO2P32-201ENST00000514865 403 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 RNA5SP208-201ENST00000516156 78 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 MTND1P36-201ENST00000522384 936 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms