Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC090151.1-201ENST00000520784 730 ntBASIC4.53□□□□□ -1.68
BDNFP23560 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.53□□□□□ -1.68
BDNFP23560 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.53□□□□□ -1.68
BDNFP23560 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.53□□□□□ -1.68
BDNFP23560 AL161729.3-201ENST00000603533 673 ntBASIC4.53□□□□□ -1.68
BDNFP23560 AC091946.2-201ENST00000606105 291 ntBASIC4.53□□□□□ -1.68
BDNFP23560 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
BDNFP23560 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
BDNFP23560 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
BDNFP23560 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.53□□□□□ -1.68
BDNFP23560 AC253576.2-201ENST00000618815 580 ntBASIC4.53□□□□□ -1.68
BDNFP23560 AC040168.1-201ENST00000623594 991 ntBASIC4.53□□□□□ -1.68
BDNFP23560 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.53□□□□□ -1.68
BDNFP23560 AC013437.2-201ENST00000639587 677 ntBASIC4.53□□□□□ -1.68
BDNFP23560 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.53□□□□□ -1.68
BDNFP23560 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
BDNFP23560 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
BDNFP23560 CASC19-261ENST00000641853 1638 ntBASIC4.53□□□□□ -1.68
BDNFP23560 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.52□□□□□ -1.69
BDNFP23560 AC002546.1-201ENST00000588041 2504 ntBASIC4.52□□□□□ -1.69
BDNFP23560 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
BDNFP23560 Y_RNA.25-201ENST00000362528 102 ntBASIC4.52□□□□□ -1.69
BDNFP23560 RNU6-707P-201ENST00000364647 95 ntBASIC4.52□□□□□ -1.69
BDNFP23560 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BDNFP23560 RNU6-224P-201ENST00000384055 107 ntBASIC4.52□□□□□ -1.69
BDNFP23560 SNORD66.1-201ENST00000391230 76 ntBASIC4.52□□□□□ -1.69
BDNFP23560 RAC1P8-201ENST00000427086 527 ntBASIC4.52□□□□□ -1.69
BDNFP23560 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.52□□□□□ -1.69
BDNFP23560 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.52□□□□□ -1.69
BDNFP23560 EXTL2P1-201ENST00000446218 416 ntBASIC4.52□□□□□ -1.69
BDNFP23560 RPL23AP81-201ENST00000455252 467 ntBASIC4.52□□□□□ -1.69
BDNFP23560 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.52□□□□□ -1.69
BDNFP23560 RPL7P19-201ENST00000469948 618 ntBASIC4.52□□□□□ -1.69
BDNFP23560 RN7SL41P-201ENST00000476144 297 ntBASIC4.52□□□□□ -1.69
BDNFP23560 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 SUMO2P5-201ENST00000506790 245 ntBASIC4.52□□□□□ -1.69
BDNFP23560 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BDNFP23560 AC112206.4-201ENST00000515142 405 ntBASIC4.52□□□□□ -1.69
BDNFP23560 RN7SKP289-201ENST00000517244 295 ntBASIC4.52□□□□□ -1.69
BDNFP23560 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.52□□□□□ -1.69
BDNFP23560 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.52□□□□□ -1.69
BDNFP23560 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.52□□□□□ -1.69
BDNFP23560 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.52□□□□□ -1.69
BDNFP23560 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.52□□□□□ -1.69
BDNFP23560 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.52□□□□□ -1.69
BDNFP23560 AC112220.2-201ENST00000605513 533 ntBASIC4.52□□□□□ -1.69
BDNFP23560 AL451086.1-201ENST00000605596 223 ntBASIC4.52□□□□□ -1.69
BDNFP23560 FAM27D1-201ENST00000612308 341 ntBASIC4.52□□□□□ -1.69
BDNFP23560 AC018755.4-201ENST00000619715 454 ntBASIC4.52□□□□□ -1.69
BDNFP23560 AC008013.2-202ENST00000637965 364 ntBASIC4.52□□□□□ -1.69
BDNFP23560 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.52□□□□□ -1.69
BDNFP23560 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
BDNFP23560 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.52□□□□□ -1.69
BDNFP23560 AL049780.3-201ENST00000624612 1583 ntBASIC4.52□□□□□ -1.69
BDNFP23560 MTND4P34-201ENST00000572715 1371 ntBASIC4.52□□□□□ -1.69
BDNFP23560 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.52□□□□□ -1.69
BDNFP23560 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
BDNFP23560 MTCO1P23-201ENST00000415223 1526 ntBASIC4.51□□□□□ -1.69
BDNFP23560 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
BDNFP23560 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
BDNFP23560 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 IL6STP1-201ENST00000346911 1020 ntBASIC4.51□□□□□ -1.69
BDNFP23560 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
BDNFP23560 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.51□□□□□ -1.69
BDNFP23560 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
BDNFP23560 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
BDNFP23560 DEFB109C-201ENST00000382575 264 ntBASIC4.51□□□□□ -1.69
BDNFP23560 DEFB109B-201ENST00000382656 264 ntBASIC4.51□□□□□ -1.69
BDNFP23560 RNU6-328P-201ENST00000390887 106 ntBASIC4.51□□□□□ -1.69
BDNFP23560 RPS26P8-201ENST00000393490 348 ntBASIC4.51□□□□□ -1.69
BDNFP23560 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 AC092017.2-201ENST00000427600 362 ntBASIC4.51□□□□□ -1.69
BDNFP23560 NANOGP6-201ENST00000429190 847 ntBASIC4.51□□□□□ -1.69
BDNFP23560 SKP1P3-201ENST00000429280 487 ntBASIC4.51□□□□□ -1.69
BDNFP23560 RPL23AP74-201ENST00000437246 471 ntBASIC4.51□□□□□ -1.69
BDNFP23560 SETP5-201ENST00000437270 562 ntBASIC4.51□□□□□ -1.69
BDNFP23560 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.51□□□□□ -1.69
BDNFP23560 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.51□□□□□ -1.69
BDNFP23560 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 PPIAP15-201ENST00000479662 484 ntBASIC4.51□□□□□ -1.69
BDNFP23560 RN7SL817P-201ENST00000480777 288 ntBASIC4.51□□□□□ -1.69
BDNFP23560 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.51□□□□□ -1.69
BDNFP23560 AL592156.1-201ENST00000508758 304 ntBASIC4.51□□□□□ -1.69
BDNFP23560 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.51□□□□□ -1.69
BDNFP23560 AC010460.2-201ENST00000509054 677 ntBASIC4.51□□□□□ -1.69
BDNFP23560 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.51□□□□□ -1.69
BDNFP23560 RNU1-61P-201ENST00000516107 151 ntBASIC4.51□□□□□ -1.69
BDNFP23560 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
BDNFP23560 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 163.1 ms