Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.01□□□□□ -1.93
VCANP13611 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.01□□□□□ -1.93
VCANP13611 SKP1P1-201ENST00000438081 489 ntBASIC3.01□□□□□ -1.93
VCANP13611 MIR449C-201ENST00000516047 92 ntBASIC3.01□□□□□ -1.93
VCANP13611 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VCANP13611 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC3.01□□□□□ -1.93
VCANP13611 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
VCANP13611 NPM1P24-201ENST00000428039 894 ntBASIC3.01□□□□□ -1.93
VCANP13611 RPL23AP16-201ENST00000441715 421 ntBASIC3.01□□□□□ -1.93
VCANP13611 RPL21P6-201ENST00000479171 504 ntBASIC3.01□□□□□ -1.93
VCANP13611 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VCANP13611 AC118273.1-201ENST00000525324 3006 ntBASIC3□□□□□ -1.93
VCANP13611 RNA5SP21-201ENST00000410917 96 ntBASIC3□□□□□ -1.93
VCANP13611 HMGB1P48-201ENST00000446155 598 ntBASIC3□□□□□ -1.93
VCANP13611 PRDX3P4-201ENST00000470828 747 ntBASIC3□□□□□ -1.93
VCANP13611 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3□□□□□ -1.93
VCANP13611 MAPK10-320ENST00000641462 6696 ntBASIC3□□□□□ -1.93
VCANP13611 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
VCANP13611 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC3□□□□□ -1.93
VCANP13611 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
VCANP13611 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
VCANP13611 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
VCANP13611 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3□□□□□ -1.93
VCANP13611 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3□□□□□ -1.93
VCANP13611 RNU1-112P-201ENST00000364401 164 ntBASIC3□□□□□ -1.93
VCANP13611 SNORA64-201ENST00000384674 134 ntBASIC3□□□□□ -1.93
VCANP13611 CYCSP45-201ENST00000402289 315 ntBASIC3□□□□□ -1.93
VCANP13611 RPS26P47-201ENST00000427219 348 ntBASIC3□□□□□ -1.93
VCANP13611 AC004057.1-201ENST00000485827 348 ntBASIC3□□□□□ -1.93
VCANP13611 RPS26P15-201ENST00000488067 348 ntBASIC3□□□□□ -1.93
VCANP13611 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3□□□□□ -1.93
VCANP13611 RN7SKP219-201ENST00000516825 296 ntBASIC3□□□□□ -1.93
VCANP13611 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3□□□□□ -1.93
VCANP13611 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
VCANP13611 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC3□□□□□ -1.93
VCANP13611 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC3□□□□□ -1.93
VCANP13611 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC3□□□□□ -1.93
VCANP13611 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC3□□□□□ -1.93
VCANP13611 RNU6-1159P-201ENST00000362933 107 ntBASIC3□□□□□ -1.93
VCANP13611 RNU4-26P-201ENST00000410270 107 ntBASIC3□□□□□ -1.93
VCANP13611 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3□□□□□ -1.93
VCANP13611 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3□□□□□ -1.93
VCANP13611 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3□□□□□ -1.93
VCANP13611 RNU6-513P-201ENST00000516104 104 ntBASIC3□□□□□ -1.93
VCANP13611 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3□□□□□ -1.93
VCANP13611 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3□□□□□ -1.93
VCANP13611 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3□□□□□ -1.93
VCANP13611 AC022149.2-201ENST00000621061 203 ntBASIC3□□□□□ -1.93
VCANP13611 AL356321.1-201ENST00000621360 228 ntBASIC3□□□□□ -1.93
VCANP13611 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.99□□□□□ -1.93
VCANP13611 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.99□□□□□ -1.93
VCANP13611 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC2.99□□□□□ -1.93
VCANP13611 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC2.99□□□□□ -1.93
VCANP13611 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 uc_338.1-201ENST00000612113 180 ntBASIC2.99□□□□□ -1.93
VCANP13611 MTND5P24-201ENST00000438892 1767 ntBASIC2.99□□□□□ -1.93
VCANP13611 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 AC008725.1-201ENST00000605123 2263 ntBASIC2.99□□□□□ -1.93
VCANP13611 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 SNORD114-30-201ENST00000364448 72 ntBASIC2.99□□□□□ -1.93
VCANP13611 SNORA80E-201ENST00000384744 137 ntBASIC2.99□□□□□ -1.93
VCANP13611 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.99□□□□□ -1.93
VCANP13611 TAF9P1-201ENST00000445421 515 ntBASIC2.99□□□□□ -1.93
VCANP13611 TAF9P2-201ENST00000454958 515 ntBASIC2.99□□□□□ -1.93
VCANP13611 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.99□□□□□ -1.93
VCANP13611 RNA5SP148-201ENST00000516527 94 ntBASIC2.99□□□□□ -1.93
VCANP13611 OR7A8P-201ENST00000595427 913 ntBASIC2.99□□□□□ -1.93
VCANP13611 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.99□□□□□ -1.93
VCANP13611 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC2.99□□□□□ -1.93
VCANP13611 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC2.99□□□□□ -1.93
VCANP13611 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC2.99□□□□□ -1.93
VCANP13611 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VCANP13611 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
VCANP13611 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.99□□□□□ -1.93
VCANP13611 RNU6-283P-201ENST00000364788 107 ntBASIC2.98□□□□□ -1.93
VCANP13611 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VCANP13611 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.98□□□□□ -1.93
VCANP13611 RPS12P18-201ENST00000442381 270 ntBASIC2.98□□□□□ -1.93
VCANP13611 RNA5SP480-201ENST00000516840 109 ntBASIC2.98□□□□□ -1.93
VCANP13611 MIR1273D-201ENST00000577266 86 ntBASIC2.98□□□□□ -1.93
VCANP13611 AC022884.3-201ENST00000579571 248 ntBASIC2.98□□□□□ -1.93
VCANP13611 AL353600.1-201ENST00000608148 251 ntBASIC2.98□□□□□ -1.93
VCANP13611 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
VCANP13611 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.98□□□□□ -1.93
VCANP13611 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VCANP13611 Y_RNA.112-201ENST00000363250 102 ntBASIC2.98□□□□□ -1.93
VCANP13611 RNU4-53P-201ENST00000410828 140 ntBASIC2.98□□□□□ -1.93
VCANP13611 OR2B8P-201ENST00000432841 938 ntBASIC2.98□□□□□ -1.93
VCANP13611 AC116337.1-201ENST00000509680 687 ntBASIC2.98□□□□□ -1.93
VCANP13611 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.98□□□□□ -1.93
VCANP13611 OR5BN1P-201ENST00000532955 829 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms