Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
VPS9D1Q9Y2B5 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC138393.1-203ENST00000327086 343 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 Y_RNA.27-201ENST00000362540 103 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 Y_RNA.292-201ENST00000364904 97 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC074375.1-201ENST00000372993 192 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RNU6-131P-201ENST00000391144 107 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 SOD1P1-201ENST00000407803 440 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 Y_RNA.592-201ENST00000410274 109 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RN7SKP30-201ENST00000411373 334 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 CYP4F30P-202ENST00000420048 405 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC007098.1-201ENST00000420122 367 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RPS12P5-201ENST00000423449 371 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC007389.2-201ENST00000434630 306 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AL162725.1-201ENST00000435405 301 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 FABP5P2-201ENST00000439042 408 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 GOT2P2-201ENST00000450663 1251 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RPL36AP55-201ENST00000454114 305 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RN7SL379P-201ENST00000479912 293 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC025271.1-201ENST00000485045 429 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC112484.3-201ENST00000505910 329 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RNA5SP278-201ENST00000517055 102 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 RNU6-64P-201ENST00000517119 105 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 Y_RNA.719-201ENST00000517156 106 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC109479.2-201ENST00000517842 174 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AL133153.1-201ENST00000557756 303 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 MIR744-201ENST00000578242 98 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC034102.8-201ENST00000615146 484 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AL596275.2-204ENST00000641628 552 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 MAPK10-344ENST00000641718 3746 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AL445437.1-201ENST00000623157 3087 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 AC092821.3-202ENST00000641304 2767 ntBASIC6.84□□□□□ -1.31
VPS9D1Q9Y2B5 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
VPS9D1Q9Y2B5 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.84□□□□□ -1.32
VPS9D1Q9Y2B5 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
VPS9D1Q9Y2B5 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
VPS9D1Q9Y2B5 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
VPS9D1Q9Y2B5 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
VPS9D1Q9Y2B5 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 EXOC5P1-201ENST00000510543 1969 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 XIAPP3-201ENST00000312918 795 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 OR10D1P-201ENST00000355343 936 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 RNU6-1329P-201ENST00000365664 107 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 Y_RNA.586-201ENST00000391146 98 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 UBBP1-201ENST00000392399 473 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 RPS4XP7-201ENST00000406274 780 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 AL663061.1-201ENST00000416625 580 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 RPS7P3-201ENST00000443360 580 ntBASIC6.83□□□□□ -1.32
VPS9D1Q9Y2B5 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms