Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AP001317.1-201ENST00000531194 960 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC100770.1-201ENST00000532310 322 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AL445363.3-201ENST00000623080 671 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC010608.2-201ENST00000624830 470 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC087821.2-201ENST00000637086 450 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 CASC19-261ENST00000641853 1638 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC091152.2-201ENST00000591628 2569 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 PRO1804-201ENST00000623780 2050 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 NUP58P1-201ENST00000502546 1738 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 RNU6-1249P-201ENST00000363237 111 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 SLC9B1P2-201ENST00000398120 1184 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AL133264.1-201ENST00000407157 562 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC092638.1-201ENST00000411966 1275 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 SKP1P3-201ENST00000429280 487 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 MRPL50P1-201ENST00000431951 384 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 snoU13.4-201ENST00000458916 104 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 RPS7P7-201ENST00000463499 571 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 RPS29P19-201ENST00000479709 171 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 RNU1-61P-201ENST00000516107 151 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 IGKV2-23-201ENST00000518729 323 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC027309.2-201ENST00000520566 192 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC091515.1-201ENST00000548110 679 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AL035411.2-201ENST00000604022 421 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 BNIP3P19-201ENST00000605397 577 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 AC006329.2-201ENST00000611491 394 ntBASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CHMP4AQ9BY43 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC118273.1-201ENST00000525324 3006 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 RNU6-263P-201ENST00000363811 107 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AL022722.2-201ENST00000402519 180 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 RNA5SP129-201ENST00000410276 118 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 RNU4-78P-201ENST00000410940 126 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 RNU6-575P-201ENST00000411326 105 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC027644.1-201ENST00000419595 298 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 MTCYBP32-201ENST00000427945 1084 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC069285.2-201ENST00000440210 275 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 PABPC1P3-201ENST00000469174 459 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 PPIAP15-201ENST00000479662 484 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC093767.1-201ENST00000504523 156 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC008837.1-201ENST00000511513 412 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 HMGN1P15-201ENST00000513870 295 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 ZNF971P-201ENST00000562068 1249 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC069366.1-201ENST00000583159 838 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AP001029.3-201ENST00000588063 596 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AP005137.2-201ENST00000609238 400 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms