Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 FAM35DP-201ENST00000323387 2712 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 ELOCP18-201ENST00000434209 337 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC111000.2-201ENST00000507775 550 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC005351.1-201ENST00000511152 786 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC016727.1-205ENST00000605437 569 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AL158062.1-201ENST00000619632 745 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC134882.1-201ENST00000603738 1676 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 RNU6-859P-201ENST00000362728 107 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 RPL21P109-201ENST00000422213 475 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 NANOGP6-201ENST00000429190 847 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 HMGN2P3-201ENST00000433603 273 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 HMGN2P5-201ENST00000436882 273 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC245517.4-201ENST00000448601 281 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 AC010469.1-201ENST00000463864 576 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 OR5AP1P-201ENST00000529730 940 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.87□□□□□ -1.95
VPS13AQ96RL7 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS13AQ96RL7 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC005261.6-201ENST00000623072 1387 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 RNU6-283P-201ENST00000364788 107 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 RNU6-482P-201ENST00000391068 107 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 HMGB3P18-201ENST00000406327 590 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC002075.2-201ENST00000425207 252 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 RPS26P47-201ENST00000427219 348 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 USP12PY-201ENST00000427677 1064 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 RPL7L1P1-201ENST00000448259 785 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC099560.2-201ENST00000457554 255 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 RPS26P3-201ENST00000470205 348 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 RPS27AP9-201ENST00000477681 438 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC004057.1-201ENST00000485827 348 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 YWHAZP1-201ENST00000556286 722 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AP001004.1-201ENST00000582468 324 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC078899.3-201ENST00000599065 212 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AL139039.1-201ENST00000401900 692 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AL592045.1-201ENST00000429867 352 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 SNORA70.19-201ENST00000516717 90 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
VPS13AQ96RL7 AL669942.2-201ENST00000620352 697 ntBASIC2.86□□□□□ -1.95
VPS13AQ96RL7 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 DUTP6-201ENST00000425573 462 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 HSPE1P16-201ENST00000426640 348 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 AC010307.1-201ENST00000467206 836 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 OR11H5P-201ENST00000554039 926 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 uc_338.1-201ENST00000612113 180 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 AL596275.2-204ENST00000641628 552 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 AL596275.2-206ENST00000641957 626 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC2.85□□□□□ -1.95
VPS13AQ96RL7 RN7SKP192-201ENST00000411291 327 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.85□□□□□ -1.95
VPS13AQ96RL7 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms