Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CLIC4P2-201ENST00000601934 717 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL158042.1-201ENST00000605338 460 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC069545.1-201ENST00000605671 358 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC121761.2-201ENST00000617300 689 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MIR6853-201ENST00000619642 74 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC091304.6-201ENST00000619761 202 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC091953.5-201ENST00000622919 233 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC112200.1-201ENST00000625015 234 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC138649.5-201ENST00000637456 137 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 FAM157B-203ENST00000639350 358 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL079305.1-201ENST00000623159 3008 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 MTND4P26-201ENST00000415971 1359 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RNU6-1214P-201ENST00000363650 109 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RN7SKP280-201ENST00000364196 304 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RNA5SP509-201ENST00000364577 119 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 TAF9BP1-201ENST00000396646 746 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 MTCO3P31-201ENST00000405526 789 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RN7SKP202-201ENST00000410439 330 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RNA5SP80-201ENST00000410475 111 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 CRYBB2P1-203ENST00000415709 538 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC006960.1-201ENST00000419980 153 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC009237.2-201ENST00000421358 284 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 CETN4P-201ENST00000432407 469 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RPL29P29-201ENST00000448725 423 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 RPL12P26-201ENST00000452430 487 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 snoU13.7-201ENST00000459220 104 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 SCARNA10-201ENST00000459255 330 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC034244.1-201ENST00000507687 207 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 SNORA48.10-201ENST00000516965 160 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 DUXAP5-201ENST00000529668 529 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 OR8L1P-201ENST00000534005 955 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC010198.2-201ENST00000550612 259 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 ZNF321P-202ENST00000550843 495 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC124068.1-201ENST00000563131 678 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC093519.1-201ENST00000566109 298 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC022662.1-201ENST00000580252 331 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC008759.1-201ENST00000589783 983 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 NIFKP6-201ENST00000598115 845 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AF131215.7-201ENST00000602443 707 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 MRPS35P3-201ENST00000603189 709 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AL161756.2-201ENST00000604597 246 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC008966.2-201ENST00000606157 453 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AL356121.2-201ENST00000624715 780 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC032011.1-201ENST00000611703 1549 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC099654.2-201ENST00000433031 1980 ntBASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.78□□□□□ -1.8
PDLIM3Q53GG5 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.78□□□□□ -1.81
PDLIM3Q53GG5 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PDLIM3Q53GG5 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
PDLIM3Q53GG5 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PDLIM3Q53GG5 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
PDLIM3Q53GG5 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms