Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC008687.2-201ENST00000597865 520 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC025588.2-201ENST00000604851 466 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AL451086.1-201ENST00000605596 223 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC021755.4-201ENST00000616620 456 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 MIR7151-201ENST00000617477 60 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC124312.6-202ENST00000623624 418 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 BMS1P21-201ENST00000634565 365 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 Z99496.1-201ENST00000469424 1477 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC018529.3-201ENST00000624212 2254 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC087190.4-201ENST00000574616 8334 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP41Q3LFD5 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP41Q3LFD5 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP41Q3LFD5 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP41Q3LFD5 RNU6-839P-201ENST00000363347 108 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 MIR513A2-201ENST00000385249 127 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 SNORD65.1-201ENST00000390889 71 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 HNRNPDP2-201ENST00000406475 478 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 CYCSP19-201ENST00000411715 316 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL450992.3-201ENST00000413192 568 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 MTCO2P21-201ENST00000419780 677 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC005005.2-201ENST00000420779 380 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 IPMKP1-201ENST00000425988 855 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 MTCO1P54-201ENST00000430139 712 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 RPS29P7-201ENST00000439662 171 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC093155.1-201ENST00000440164 826 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC011979.1-201ENST00000472300 483 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC010683.1-201ENST00000473673 378 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC110792.1-201ENST00000491826 472 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 RPL30P11-201ENST00000495304 339 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AP002812.1-201ENST00000495378 474 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 MTCYBP35-201ENST00000503630 1137 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC139783.2-201ENST00000504847 1145 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 HNRNPKP5-201ENST00000515300 253 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 RNU6-885P-201ENST00000516607 104 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 RN7SKP96-201ENST00000516948 297 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 RNU1-45P-201ENST00000517191 141 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 MTCO2P15-201ENST00000532655 656 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC068446.3-201ENST00000555285 382 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC090695.1-201ENST00000561269 1222 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC090312.1-201ENST00000580637 348 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 Z99289.3-201ENST00000605586 594 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 MIR92B-201ENST00000607575 96 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC105227.2-201ENST00000615075 605 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC099669.2-201ENST00000616549 437 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AL138721.1-201ENST00000616756 179 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 AP002791.1-201ENST00000623291 381 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP41Q3LFD5 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC097504.1-201ENST00000515103 2415 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP41Q3LFD5 AC012020.1-201ENST00000624541 1728 ntBASIC4.41□□□□□ -1.7
USP41Q3LFD5 MTND4P8-201ENST00000514997 1362 ntBASIC4.4□□□□□ -1.7
USP41Q3LFD5 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.4□□□□□ -1.7
USP41Q3LFD5 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.7
USP41Q3LFD5 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.4□□□□□ -1.7
USP41Q3LFD5 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
USP41Q3LFD5 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
USP41Q3LFD5 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.4□□□□□ -1.7
USP41Q3LFD5 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 RNA5SP391-201ENST00000363456 119 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 HSPE1P12-201ENST00000412576 301 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC007435.1-201ENST00000421086 415 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC010099.3-201ENST00000423896 409 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC092447.3-201ENST00000426027 686 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms