Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU1-54P-201ENST00000517181 120 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 AC024224.1-201ENST00000538284 609 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 AC024619.4-201ENST00000580924 316 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 AC004805.3-201ENST00000603178 310 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AL589743.6-201ENST00000611025 117 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC015967.1-201ENST00000619893 476 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AL445363.3-201ENST00000623080 671 ntBASIC5.94□□□□□ -1.46
MSX1P28360 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 CR392039.4-201ENST00000624968 501 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC055839.1-201ENST00000634467 498 ntBASIC5.94□□□□□ -1.46
MSX1P28360 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 AC110597.1-201ENST00000562669 3176 ntBASIC5.94□□□□□ -1.46
MSX1P28360 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
MSX1P28360 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 AKAP17BP-201ENST00000431706 2719 ntBASIC5.94□□□□□ -1.46
MSX1P28360 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 HSPD1P8-201ENST00000400121 1658 ntBASIC5.94□□□□□ -1.46
MSX1P28360 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
MSX1P28360 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 BDP1P-201ENST00000582658 1990 ntBASIC5.93□□□□□ -1.46
MSX1P28360 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
MSX1P28360 TPTE2P4-201ENST00000258589 1605 ntBASIC5.93□□□□□ -1.46
MSX1P28360 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX1P28360 AC130650.2-201ENST00000618736 2403 ntBASIC5.93□□□□□ -1.46
MSX1P28360 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 RNU6-61P-201ENST00000365528 109 ntBASIC5.93□□□□□ -1.46
MSX1P28360 RNU6-472P-201ENST00000384299 107 ntBASIC5.93□□□□□ -1.46
MSX1P28360 Y_RNA.473-201ENST00000384333 102 ntBASIC5.93□□□□□ -1.46
MSX1P28360 Y_RNA.515-201ENST00000384535 112 ntBASIC5.93□□□□□ -1.46
MSX1P28360 RNU6-713P-201ENST00000384761 107 ntBASIC5.93□□□□□ -1.46
MSX1P28360 RNA5SP219-201ENST00000390940 113 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AL136372.1-201ENST00000403060 228 ntBASIC5.93□□□□□ -1.46
MSX1P28360 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX1P28360 BX284632.2-201ENST00000421091 399 ntBASIC5.93□□□□□ -1.46
MSX1P28360 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.93□□□□□ -1.46
MSX1P28360 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 POU5F1P5-201ENST00000445059 658 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AL359955.2-201ENST00000445380 353 ntBASIC5.93□□□□□ -1.46
MSX1P28360 HMGB3P30-201ENST00000457863 606 ntBASIC5.93□□□□□ -1.46
MSX1P28360 SCARNA18-201ENST00000459004 134 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AC092824.1-201ENST00000483524 576 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AC022493.2-201ENST00000506122 481 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AC104806.1-201ENST00000508720 308 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AC093664.1-201ENST00000511779 289 ntBASIC5.93□□□□□ -1.46
MSX1P28360 SNORA74.1-201ENST00000516320 180 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AC131281.1-201ENST00000522984 164 ntBASIC5.93□□□□□ -1.46
MSX1P28360 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX1P28360 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX1P28360 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX1P28360 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX1P28360 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX1P28360 MIR6721-201ENST00000617181 87 ntBASIC5.93□□□□□ -1.46
MSX1P28360 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX1P28360 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
MSX1P28360 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 AC034229.2-201ENST00000566945 2508 ntBASIC5.93□□□□□ -1.46
MSX1P28360 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
MSX1P28360 AL022323.4-201ENST00000623980 13120 ntBASIC5.93□□□□□ -1.46
MSX1P28360 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX1P28360 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 SELE-203ENST00000367775 3389 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX1P28360 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
MSX1P28360 AC116158.1-201ENST00000560231 2129 ntBASIC5.92□□□□□ -1.46
MSX1P28360 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 RNA5SP279-201ENST00000365513 117 ntBASIC5.92□□□□□ -1.46
MSX1P28360 RNU4-2-201ENST00000365668 141 ntBASIC5.92□□□□□ -1.46
MSX1P28360 Y_RNA.424-201ENST00000384063 103 ntBASIC5.92□□□□□ -1.46
MSX1P28360 SNORA24.1-201ENST00000384401 135 ntBASIC5.92□□□□□ -1.46
MSX1P28360 HMGB3P7-201ENST00000400214 611 ntBASIC5.92□□□□□ -1.46
MSX1P28360 RNU2-23P-201ENST00000410545 195 ntBASIC5.92□□□□□ -1.46
MSX1P28360 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms