Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-1281P-201ENST00000516223 105 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP31-201ENST00000516354 278 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AP004607.2-201ENST00000533949 322 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC243960.4-201ENST00000600532 288 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AL355598.1-201ENST00000604169 202 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AL078596.1-201ENST00000624856 447 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 Y_RNA.1-201ENST00000352915 104 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 Y_RNA.146-201ENST00000363549 102 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP124-201ENST00000364730 341 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC013442.1-201ENST00000397347 228 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 HSPA8P15-201ENST00000401676 786 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RNA5SP178-201ENST00000410380 128 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP293-201ENST00000411389 296 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RPS7P15-201ENST00000415804 584 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RPA2P2-201ENST00000419698 796 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 SNRPEP10-201ENST00000420249 274 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 FO393419.3-201ENST00000428741 282 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 GAPDHP25-201ENST00000447061 1001 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AL157827.1-201ENST00000447622 132 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 BTF3P6-201ENST00000448054 499 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC012170.1-201ENST00000495139 359 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RNU6-1046P-201ENST00000516538 107 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP116-201ENST00000516902 319 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RGS4-207ENST00000527809 817 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 PDCD5P1-201ENST00000543528 309 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 MIR3614-201ENST00000581261 86 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 RPL12P25-202ENST00000598100 674 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC104695.2-201ENST00000605056 775 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AC000068.2-201ENST00000608816 460 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 ATP8A2P2-201ENST00000437678 1568 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 AL353796.1-201ENST00000561542 3241 ntBASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
CCDC39Q9UFE4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP153-201ENST00000365026 316 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RNU6-331P-201ENST00000384724 107 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 HMGB3P7-201ENST00000400214 611 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL049693.1-201ENST00000402760 611 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL122016.1-201ENST00000403365 367 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL136131.1-201ENST00000406079 803 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 SNORA11.5-201ENST00000408163 128 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RNA5SP487-201ENST00000410186 122 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RPS3AP3-201ENST00000411933 242 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RPL36AP10-201ENST00000421785 322 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 SDCBPP2-201ENST00000424643 885 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC079807.1-201ENST00000429993 481 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL365400.1-201ENST00000431854 640 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RPL7P11-201ENST00000437586 658 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RABEPKP1-201ENST00000440529 1026 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AP000281.1-201ENST00000444036 316 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL031584.1-201ENST00000447169 754 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms