Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU2-6P-201ENST00000411404 190 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.84□□□□□ -1.47
SOX4Q06945 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SOX4Q06945 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX4Q06945 BTF3P13-201ENST00000513224 490 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.84□□□□□ -1.47
SOX4Q06945 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC093677.1-201ENST00000514414 678 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 RNU4-49P-201ENST00000516080 140 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 RNU6-1046P-201ENST00000516538 107 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 SCARNA16.4-201ENST00000516956 187 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 AC008562.1-201ENST00000521763 330 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 HMGB1P40-201ENST00000525121 540 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC127381.1-201ENST00000555979 939 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC090312.1-201ENST00000580637 348 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SOX4Q06945 RPL26P30-202ENST00000602923 645 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 AC010591.1-201ENST00000603941 649 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.84□□□□□ -1.47
SOX4Q06945 CYP4F35P-202ENST00000636121 390 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SOX4Q06945 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SOX4Q06945 AC138907.8-201ENST00000623981 2256 ntBASIC5.84□□□□□ -1.47
SOX4Q06945 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SOX4Q06945 RIOK3P1-201ENST00000418778 1528 ntBASIC5.84□□□□□ -1.48
SOX4Q06945 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SOX4Q06945 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 AC020656.2-201ENST00000613291 5309 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX4Q06945 SNORA20.2-201ENST00000383922 131 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 MIR223-201ENST00000385204 110 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 RNU4-34P-201ENST00000410431 124 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX4Q06945 AC108075.1-201ENST00000424692 529 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AC019097.1-201ENST00000424783 735 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AL353777.1-201ENST00000425552 326 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 SRIP2-201ENST00000428470 166 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 MTCO3P21-201ENST00000430791 643 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 RPS15AP9-201ENST00000439856 381 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX4Q06945 PRPF38AP1-201ENST00000451976 933 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 RNU6-329P-201ENST00000459618 107 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AL163540.1-201ENST00000485382 386 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX4Q06945 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.83□□□□□ -1.48
SOX4Q06945 Y_RNA.711-201ENST00000516993 102 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 RNU6-1314P-201ENST00000517139 104 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 RNA5SP373-201ENST00000517271 95 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 IGKV2-36-201ENST00000519999 223 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.83□□□□□ -1.48
SOX4Q06945 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 HMGB1P6-201ENST00000569046 646 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AC019322.1-201ENST00000571869 389 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.83□□□□□ -1.48
SOX4Q06945 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.83□□□□□ -1.48
SOX4Q06945 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.83□□□□□ -1.48
SOX4Q06945 Z84480.1-201ENST00000605131 311 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AC021646.1-201ENST00000605469 484 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC5.83□□□□□ -1.48
SOX4Q06945 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.83□□□□□ -1.48
SOX4Q06945 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.83□□□□□ -1.48
SOX4Q06945 OR55B1P-203ENST00000641518 2602 ntBASIC5.83□□□□□ -1.48
SOX4Q06945 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SOX4Q06945 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
SOX4Q06945 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.82□□□□□ -1.48
SOX4Q06945 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SOX4Q06945 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.82□□□□□ -1.48
SOX4Q06945 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.82□□□□□ -1.48
SOX4Q06945 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SOX4Q06945 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SOX4Q06945 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SOX4Q06945 AC011493.1-201ENST00000596753 1632 ntBASIC5.82□□□□□ -1.48
SOX4Q06945 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
SOX4Q06945 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.82□□□□□ -1.48
SOX4Q06945 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SOX4Q06945 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SOX4Q06945 MIR105-2-201ENST00000385083 81 ntBASIC5.82□□□□□ -1.48
SOX4Q06945 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC5.82□□□□□ -1.48
SOX4Q06945 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.82□□□□□ -1.48
SOX4Q06945 NDUFB4P5-201ENST00000415445 361 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms