Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
PTPN4P29074 PRO1804-201ENST00000623780 2050 ntBASIC3.9□□□□□ -1.78
PTPN4P29074 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
PTPN4P29074 CYCSP19-201ENST00000411715 316 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 TPT1P2-201ENST00000413105 503 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC002075.2-201ENST00000425207 252 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 CKS1BP5-201ENST00000434172 273 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 RPS29P7-201ENST00000439662 171 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC078817.1-201ENST00000492623 435 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 RNU2-58P-201ENST00000516403 183 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 SNORA67.7-201ENST00000516664 135 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 RNU1-45P-201ENST00000517191 141 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 OR4R3P-201ENST00000525084 838 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 MTND2P26-201ENST00000528255 1029 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 RN7SL703P-201ENST00000578485 302 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.9□□□□□ -1.79
PTPN4P29074 MIR3158-1-201ENST00000583596 81 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN4P29074 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 AL606490.9-201ENST00000603331 271 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC114878.2-201ENST00000604863 1251 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC005014.3-201ENST00000605985 190 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC090912.3-201ENST00000609775 533 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AL109620.1-201ENST00000618738 1197 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 AC253576.2-201ENST00000618815 580 ntBASIC3.9□□□□□ -1.79
PTPN4P29074 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN4P29074 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
PTPN4P29074 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTPN4P29074 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
PTPN4P29074 MTCO1P24-201ENST00000515438 1558 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.89□□□□□ -1.79
PTPN4P29074 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.89□□□□□ -1.79
PTPN4P29074 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
PTPN4P29074 ATP5F1P3-201ENST00000397213 657 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.89□□□□□ -1.79
PTPN4P29074 AL389915.1-201ENST00000422463 466 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC241520.1-201ENST00000422654 1099 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 OR51AB1P-201ENST00000429046 620 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC008280.2-201ENST00000455473 307 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 snoU13.7-201ENST00000459220 104 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.89□□□□□ -1.79
PTPN4P29074 AC015908.1-201ENST00000478739 476 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC126121.1-201ENST00000482313 553 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC110792.1-201ENST00000491826 472 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 NIPA2P2-201ENST00000496376 1083 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.89□□□□□ -1.79
PTPN4P29074 MTCO1P30-201ENST00000515244 580 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 RN7SKP83-201ENST00000516512 178 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.89□□□□□ -1.79
PTPN4P29074 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.89□□□□□ -1.79
PTPN4P29074 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
PTPN4P29074 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.89□□□□□ -1.79
PTPN4P29074 TMF1P1-201ENST00000576058 373 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AL451044.1-201ENST00000604867 238 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.89□□□□□ -1.79
PTPN4P29074 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.89□□□□□ -1.79
PTPN4P29074 AC008759.3-201ENST00000613300 508 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 AC006133.1-201ENST00000617106 264 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PTPN4P29074 AC090337.1-201ENST00000579651 2074 ntBASIC3.89□□□□□ -1.79
PTPN4P29074 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
PTPN4P29074 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
PTPN4P29074 AC116667.1-201ENST00000604855 2072 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
PTPN4P29074 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PTPN4P29074 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.88□□□□□ -1.79
PTPN4P29074 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PTPN4P29074 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
PTPN4P29074 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PTPN4P29074 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
PTPN4P29074 RNU6-1293P-201ENST00000384077 107 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 RNU2-21P-201ENST00000410368 188 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.88□□□□□ -1.79
PTPN4P29074 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.88□□□□□ -1.79
PTPN4P29074 AC007389.2-201ENST00000434630 306 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 UBE2V1P5-201ENST00000440070 405 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 RRM2P4-201ENST00000441721 562 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 HSFY3P-201ENST00000444242 1191 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PTPN4P29074 AL096803.2-201ENST00000450032 677 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.88□□□□□ -1.79
PTPN4P29074 RPL7P1-201ENST00000468161 747 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 RPL7P9-201ENST00000468715 747 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 RPS17P11-201ENST00000474297 293 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 AC016550.1-201ENST00000505348 785 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 KRT19P6-201ENST00000510983 209 ntBASIC3.88□□□□□ -1.79
PTPN4P29074 HMGN1P15-201ENST00000513870 295 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms