Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SSXP5-201ENST00000443473 287 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 GAPDHP27-201ENST00000447427 1020 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 HMGB1P26-201ENST00000452520 628 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 SNORD108-201ENST00000459332 71 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 RN7SL132P-201ENST00000478131 296 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 HMGB1P21-201ENST00000502313 581 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.49□□□□□ -1.85
SHOX2O60902 MTCO3P42-201ENST00000509488 518 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 MTCO3P39-201ENST00000514812 518 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 RN7SKP82-201ENST00000516786 223 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 SCARNA14-201ENST00000516903 136 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 OR4V1P-201ENST00000525394 1140 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
SHOX2O60902 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.49□□□□□ -1.85
SHOX2O60902 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.49□□□□□ -1.85
SHOX2O60902 AC092868.3-201ENST00000560515 784 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SHOX2O60902 AC120057.2-201ENST00000571520 271 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 MIR4506-201ENST00000584693 77 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.49□□□□□ -1.85
SHOX2O60902 AC135803.1-201ENST00000608748 565 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SHOX2O60902 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.49□□□□□ -1.85
SHOX2O60902 MIR6500-201ENST00000622700 86 ntBASIC3.49□□□□□ -1.85
SHOX2O60902 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SHOX2O60902 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.49□□□□□ -1.85
SHOX2O60902 AC017071.1-201ENST00000564407 2204 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SHOX2O60902 MIR491-201ENST00000384877 84 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 ZNF602P-201ENST00000405929 924 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.48□□□□□ -1.85
SHOX2O60902 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC3.48□□□□□ -1.85
SHOX2O60902 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.48□□□□□ -1.85
SHOX2O60902 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
SHOX2O60902 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.48□□□□□ -1.85
SHOX2O60902 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.48□□□□□ -1.85
SHOX2O60902 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.48□□□□□ -1.85
SHOX2O60902 CBX1P4-201ENST00000439415 457 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 RPL6P5-201ENST00000445678 828 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 CYCSP53-201ENST00000455540 265 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.48□□□□□ -1.85
SHOX2O60902 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.48□□□□□ -1.85
SHOX2O60902 RPL9P32-201ENST00000464118 620 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.48□□□□□ -1.85
SHOX2O60902 RNA5SP385-201ENST00000515947 110 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 RNU6-1004P-201ENST00000516584 111 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 RNU6-352P-201ENST00000516908 107 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.48□□□□□ -1.85
SHOX2O60902 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
SHOX2O60902 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.48□□□□□ -1.85
SHOX2O60902 OR8R1P-201ENST00000543943 764 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 AC025884.1-201ENST00000556034 378 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.48□□□□□ -1.85
SHOX2O60902 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.48□□□□□ -1.85
SHOX2O60902 AC069200.1-201ENST00000609511 323 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 CR392039.4-201ENST00000624968 501 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SHOX2O60902 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SHOX2O60902 MAPK10-362ENST00000641864 4484 ntBASIC3.48□□□□□ -1.85
SHOX2O60902 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SHOX2O60902 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SHOX2O60902 SYT14P1-202ENST00000600441 1448 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SHOX2O60902 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.47□□□□□ -1.85
SHOX2O60902 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 RNU6-31P-201ENST00000384388 108 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 ETF1P3-201ENST00000430422 1160 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SHOX2O60902 AL627224.1-201ENST00000448334 444 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.47□□□□□ -1.85
SHOX2O60902 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.47□□□□□ -1.85
SHOX2O60902 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.47□□□□□ -1.85
SHOX2O60902 AP000873.1-201ENST00000463987 400 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AC108860.1-201ENST00000484521 383 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.47□□□□□ -1.85
SHOX2O60902 RNA5SP217-201ENST00000515959 91 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 Vault.1-201ENST00000516474 102 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC3.47□□□□□ -1.85
SHOX2O60902 IGHV3-76-201ENST00000522465 295 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SHOX2O60902 AC011471.1-201ENST00000585766 187 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.47□□□□□ -1.85
SHOX2O60902 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.47□□□□□ -1.85
SHOX2O60902 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 AC055764.2-201ENST00000610089 670 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 RNA5SP196-201ENST00000625967 102 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.47□□□□□ -1.85
SHOX2O60902 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.47□□□□□ -1.85
SHOX2O60902 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
SHOX2O60902 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SHOX2O60902 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SHOX2O60902 NMD3P1-201ENST00000439704 1488 ntBASIC3.47□□□□□ -1.85
SHOX2O60902 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
SHOX2O60902 AL672296.1-201ENST00000427780 2158 ntBASIC3.46□□□□□ -1.85
SHOX2O60902 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.46□□□□□ -1.85
SHOX2O60902 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SHOX2O60902 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.46□□□□□ -1.86
SHOX2O60902 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms