Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 SMG1P6-201ENST00000532337 2930 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AC011755.1-201ENST00000623763 2049 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP39Q53GS9 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
USP39Q53GS9 RNA5SP505-201ENST00000364748 108 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 RNU6-1009P-201ENST00000390996 107 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RNU6-876P-201ENST00000391295 104 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RNU6-248P-201ENST00000410720 107 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AL121878.1-201ENST00000418638 859 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC009237.2-201ENST00000421358 284 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC007559.1-201ENST00000428736 355 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AL365184.2-201ENST00000431139 435 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AL050321.1-201ENST00000432363 400 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AL022238.1-201ENST00000442557 355 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RPS26P30-201ENST00000443431 335 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 OR7E125P-201ENST00000443450 846 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
USP39Q53GS9 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 CALM1P2-201ENST00000452941 448 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC024589.1-201ENST00000512207 263 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AC108120.2-201ENST00000512973 294 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RNU6-1225P-201ENST00000516336 65 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RN7SKP31-201ENST00000516354 278 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RNA5SP43-201ENST00000516559 110 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RNU6-1308P-201ENST00000516817 103 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC083923.1-201ENST00000523708 376 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.11□□□□□ -1.59
USP39Q53GS9 OR5AK1P-201ENST00000524837 922 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.11□□□□□ -1.59
USP39Q53GS9 NIFKP8-201ENST00000560500 874 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 MIR4284-201ENST00000578924 81 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USP39Q53GS9 AP001836.1-201ENST00000604675 523 ntBASIC5.11□□□□□ -1.59
USP39Q53GS9 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP39Q53GS9 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
USP39Q53GS9 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
USP39Q53GS9 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP39Q53GS9 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
USP39Q53GS9 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP39Q53GS9 AC010329.2-201ENST00000595195 2737 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.1□□□□□ -1.59
USP39Q53GS9 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.1□□□□□ -1.59
USP39Q53GS9 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC007066.1-201ENST00000392902 381 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 EEF1A1P40-201ENST00000412883 573 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.1□□□□□ -1.59
USP39Q53GS9 MTCO1P23-201ENST00000415223 1526 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.1□□□□□ -1.59
USP39Q53GS9 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC006026.1-201ENST00000444025 1803 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AL354714.3-201ENST00000447284 493 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 NOP56P2-201ENST00000447491 769 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 RPL23AP35-201ENST00000451906 501 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 SNORD42A-201ENST00000459584 64 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 RN7SL443P-201ENST00000464331 290 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AC013828.1-201ENST00000481845 158 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 RN7SL814P-201ENST00000487715 300 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.1□□□□□ -1.59
USP39Q53GS9 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.1□□□□□ -1.59
USP39Q53GS9 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC5.1□□□□□ -1.59
USP39Q53GS9 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.1□□□□□ -1.59
USP39Q53GS9 AC010342.1-201ENST00000514047 877 ntBASIC5.1□□□□□ -1.59
USP39Q53GS9 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.1□□□□□ -1.59
USP39Q53GS9 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms