Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 VTA1P1-201ENST00000414044 866 ntBASIC1.9□□□□□ -2.1
HSPG2P98160 AC112184.1-201ENST00000505179 312 ntBASIC1.9□□□□□ -2.1
HSPG2P98160 ZKSCAN7P1-201ENST00000543668 673 ntBASIC1.9□□□□□ -2.1
HSPG2P98160 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC1.9□□□□□ -2.1
HSPG2P98160 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC1.9□□□□□ -2.1
HSPG2P98160 MIR622-201ENST00000638396 96 ntBASIC1.9□□□□□ -2.1
HSPG2P98160 AC017002.4-201ENST00000604721 1525 ntBASIC1.9□□□□□ -2.1
HSPG2P98160 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC1.9□□□□□ -2.1
HSPG2P98160 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 SAGE4P-201ENST00000442271 3381 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 AC018555.1-201ENST00000567548 1980 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 SNORA71.1-201ENST00000364523 117 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 SNORD67-201ENST00000390833 111 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 HLFP1-201ENST00000402375 499 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 RN7SKP223-201ENST00000410582 62 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 KATNBL1P2-201ENST00000433311 835 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC1.9□□□□□ -2.11
HSPG2P98160 AL442163.2-201ENST00000553912 710 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC1.9□□□□□ -2.11
HSPG2P98160 AC023389.2-201ENST00000580031 955 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 AP005262.1-201ENST00000582646 997 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 MIR6817-201ENST00000615588 66 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC1.9□□□□□ -2.11
HSPG2P98160 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC1.9□□□□□ -2.11
HSPG2P98160 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 ZNF658B-202ENST00000615961 3375 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 FAM133CP-201ENST00000332869 704 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC1.9□□□□□ -2.11
HSPG2P98160 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC1.9□□□□□ -2.11
HSPG2P98160 NPM1P24-201ENST00000428039 894 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 FCF1P8-201ENST00000510322 597 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 RN7SKP209-201ENST00000516888 304 ntBASIC1.9□□□□□ -2.11
HSPG2P98160 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC1.9□□□□□ -2.11
HSPG2P98160 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC1.9□□□□□ -2.11
HSPG2P98160 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
HSPG2P98160 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 SNORA9.2-201ENST00000365361 133 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 RN7SKP220-201ENST00000410611 288 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 HSPE1P16-201ENST00000426640 348 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 CKS1BP2-201ENST00000497342 240 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 MIR4648-201ENST00000580107 72 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC020914.4-201ENST00000597690 277 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 AL034351.1-201ENST00000605288 668 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HSPG2P98160 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 Y_RNA.40-201ENST00000362645 93 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AP002088.1-201ENST00000382740 395 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 AC069499.1-201ENST00000489433 509 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC018797.3-201ENST00000513388 1241 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 RNA5SP367-201ENST00000516557 118 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC1.89□□□□□ -2.11
HSPG2P98160 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC1.89□□□□□ -2.11
HSPG2P98160 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 ELF2P3-201ENST00000445099 1506 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 GABRG2-229ENST00000641017 3628 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC1.89□□□□□ -2.11
HSPG2P98160 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 ARL5AP4-201ENST00000430731 512 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 SEC11B-201ENST00000518383 499 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 BNIP3P8-201ENST00000597863 560 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC026790.2-201ENST00000606282 430 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HSPG2P98160 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC1.89□□□□□ -2.11
HSPG2P98160 AC019072.1-201ENST00000604535 1551 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HSPG2P98160 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HSPG2P98160 RNU2-52P-201ENST00000410680 190 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC105402.1-201ENST00000413336 545 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms