Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 RBMY2KP-201ENST00000418221 992 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AL513174.1-201ENST00000423182 629 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 NPM1P24-201ENST00000428039 894 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.92□□□□□ -1.62
MSX2P35548 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 AC009961.2-201ENST00000435771 251 ntBASIC4.92□□□□□ -1.62
MSX2P35548 RPL23AP19-201ENST00000436229 369 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AL450996.1-201ENST00000445574 1202 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AL589765.3-201ENST00000446084 462 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.92□□□□□ -1.62
MSX2P35548 SETP20-201ENST00000457046 852 ntBASIC4.92□□□□□ -1.62
MSX2P35548 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 ACA64.1-201ENST00000459171 127 ntBASIC4.92□□□□□ -1.62
MSX2P35548 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 AC023598.1-201ENST00000472521 361 ntBASIC4.92□□□□□ -1.62
MSX2P35548 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 AC006499.2-201ENST00000513470 337 ntBASIC4.92□□□□□ -1.62
MSX2P35548 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 MTND5P4-201ENST00000514978 288 ntBASIC4.92□□□□□ -1.62
MSX2P35548 Y_RNA.704-201ENST00000516851 102 ntBASIC4.92□□□□□ -1.62
MSX2P35548 RN7SKP99-201ENST00000517028 307 ntBASIC4.92□□□□□ -1.62
MSX2P35548 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 IGKV3D-34-201ENST00000522638 302 ntBASIC4.92□□□□□ -1.62
MSX2P35548 FAM92A1P1-201ENST00000528023 890 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 AC068587.4-201ENST00000533893 186 ntBASIC4.92□□□□□ -1.62
MSX2P35548 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 AC090751.1-201ENST00000566966 267 ntBASIC4.92□□□□□ -1.62
MSX2P35548 MIR4307-201ENST00000582802 84 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 AL096712.1-201ENST00000614561 159 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC4.92□□□□□ -1.62
MSX2P35548 AC022106.2-201ENST00000620114 757 ntBASIC4.92□□□□□ -1.62
MSX2P35548 AC231657.1-201ENST00000624313 397 ntBASIC4.92□□□□□ -1.62
MSX2P35548 MIR1321-201ENST00000637766 79 ntBASIC4.92□□□□□ -1.62
MSX2P35548 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 PCAT14-202ENST00000627127 3935 ntBASIC4.92□□□□□ -1.62
MSX2P35548 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 SNRPEP3-201ENST00000338402 276 ntBASIC4.91□□□□□ -1.62
MSX2P35548 RNU6-533P-201ENST00000384144 107 ntBASIC4.91□□□□□ -1.62
MSX2P35548 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.91□□□□□ -1.62
MSX2P35548 MIR1271-201ENST00000408537 86 ntBASIC4.91□□□□□ -1.62
MSX2P35548 RNU6-603P-201ENST00000411403 107 ntBASIC4.91□□□□□ -1.62
MSX2P35548 GSTM3P2-201ENST00000412746 530 ntBASIC4.91□□□□□ -1.62
MSX2P35548 BX295541.1-201ENST00000417774 250 ntBASIC4.91□□□□□ -1.62
MSX2P35548 USP9YP27-201ENST00000418455 438 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 AC073069.1-201ENST00000428657 441 ntBASIC4.91□□□□□ -1.62
MSX2P35548 DYNLL1P7-201ENST00000429273 258 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 MTND5P14-201ENST00000441481 1267 ntBASIC4.91□□□□□ -1.62
MSX2P35548 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 AP006222.1-205ENST00000450734 457 ntBASIC4.91□□□□□ -1.62
MSX2P35548 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 HMGN1P10-201ENST00000474557 553 ntBASIC4.91□□□□□ -1.62
MSX2P35548 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.91□□□□□ -1.62
MSX2P35548 RPL7P51-201ENST00000490532 749 ntBASIC4.91□□□□□ -1.62
MSX2P35548 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 KCTD9P5-201ENST00000504141 1170 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 SCARNA15.1-201ENST00000516384 125 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 MTND1P35-201ENST00000526739 508 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC013828.2-201ENST00000532487 235 ntBASIC4.91□□□□□ -1.62
MSX2P35548 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.91□□□□□ -1.62
MSX2P35548 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 AL133457.1-201ENST00000564251 987 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 AC005341.1-201ENST00000571086 708 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms