Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC026956.1-201ENST00000558741 396 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX1P28360 OR1E3-201ENST00000575608 948 ntBASIC5.97□□□□□ -1.45
MSX1P28360 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX1P28360 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 AC092447.9-201ENST00000603395 144 ntBASIC5.97□□□□□ -1.45
MSX1P28360 SNORD96A-201ENST00000606577 79 ntBASIC5.97□□□□□ -1.45
MSX1P28360 DUSP12P1-201ENST00000612874 516 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC025034.2-201ENST00000623264 286 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AL138713.1-201ENST00000624026 2130 ntBASIC5.97□□□□□ -1.45
MSX1P28360 SNX18P12-201ENST00000624821 759 ntBASIC5.97□□□□□ -1.45
MSX1P28360 SNX18P10-201ENST00000625014 519 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AP001052.1-201ENST00000626421 99 ntBASIC5.97□□□□□ -1.45
MSX1P28360 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX1P28360 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 AC091812.1-201ENST00000432235 1948 ntBASIC5.97□□□□□ -1.45
MSX1P28360 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC5.97□□□□□ -1.45
MSX1P28360 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
MSX1P28360 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
MSX1P28360 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
MSX1P28360 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
MSX1P28360 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
MSX1P28360 DOCK11P1-201ENST00000553480 5932 ntBASIC5.96□□□□□ -1.45
MSX1P28360 AC005261.2-201ENST00000593427 4258 ntBASIC5.96□□□□□ -1.46
MSX1P28360 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
MSX1P28360 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.96□□□□□ -1.46
MSX1P28360 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
MSX1P28360 RNU6-1287P-201ENST00000362914 107 ntBASIC5.96□□□□□ -1.46
MSX1P28360 Y_RNA.350-201ENST00000365409 98 ntBASIC5.96□□□□□ -1.46
MSX1P28360 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
MSX1P28360 U3.52-201ENST00000384034 216 ntBASIC5.96□□□□□ -1.46
MSX1P28360 RNU6-729P-201ENST00000384399 107 ntBASIC5.96□□□□□ -1.46
MSX1P28360 RNU6-1060P-201ENST00000384664 107 ntBASIC5.96□□□□□ -1.46
MSX1P28360 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 RNU4-46P-201ENST00000410818 138 ntBASIC5.96□□□□□ -1.46
MSX1P28360 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 AC009965.2-201ENST00000425328 970 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 HMGB1P9-201ENST00000429856 646 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC092013.1-201ENST00000438795 332 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC079922.1-201ENST00000443291 359 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.96□□□□□ -1.46
MSX1P28360 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC005229.2-201ENST00000456995 399 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.96□□□□□ -1.46
MSX1P28360 AC018797.1-201ENST00000510791 255 ntBASIC5.96□□□□□ -1.46
MSX1P28360 Y_RNA.670-201ENST00000516255 105 ntBASIC5.96□□□□□ -1.46
MSX1P28360 CYCSP22-201ENST00000517555 339 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC012400.1-201ENST00000518452 381 ntBASIC5.96□□□□□ -1.46
MSX1P28360 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 AC023157.2-201ENST00000540596 141 ntBASIC5.96□□□□□ -1.46
MSX1P28360 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.96□□□□□ -1.46
MSX1P28360 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.96□□□□□ -1.46
MSX1P28360 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.96□□□□□ -1.46
MSX1P28360 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 AC063977.7-201ENST00000594454 337 ntBASIC5.96□□□□□ -1.46
MSX1P28360 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 CYCSP1-201ENST00000604815 315 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AC098479.1-201ENST00000609225 154 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AL049794.2-201ENST00000616301 365 ntBASIC5.96□□□□□ -1.46
MSX1P28360 MIR6085-201ENST00000618314 110 ntBASIC5.96□□□□□ -1.46
MSX1P28360 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.96□□□□□ -1.46
MSX1P28360 AC073488.9-201ENST00000631601 754 ntBASIC5.96□□□□□ -1.46
MSX1P28360 AP000550.3-201ENST00000637734 379 ntBASIC5.96□□□□□ -1.46
MSX1P28360 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 AC023245.2-201ENST00000530760 2978 ntBASIC5.96□□□□□ -1.46
MSX1P28360 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSX1P28360 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms