Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC5.65□□□□□ -1.5
COL8A1P27658 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 RNY1P5-201ENST00000383890 115 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 Y_RNA.551-201ENST00000384661 102 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 MIR640-201ENST00000385086 96 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL8A1P27658 MIR1204-201ENST00000408388 67 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 RNU6-735P-201ENST00000410612 107 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.65□□□□□ -1.5
COL8A1P27658 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC5.65□□□□□ -1.5
COL8A1P27658 MRPS18CP6-201ENST00000423587 223 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AC239367.3-201ENST00000428996 814 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 AC064862.4-201ENST00000442180 334 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AL163193.1-201ENST00000444895 788 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC5.65□□□□□ -1.5
COL8A1P27658 AL445466.1-201ENST00000448432 357 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 PABPC1P3-201ENST00000469174 459 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 RN7SL799P-201ENST00000475891 298 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 RPS10P20-201ENST00000494130 463 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 SNORA25.14-201ENST00000516481 132 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 EIF4A2P5-201ENST00000529914 499 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.65□□□□□ -1.5
COL8A1P27658 AC044860.2-201ENST00000561005 179 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AC015720.2-201ENST00000567709 334 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 RN7SL475P-201ENST00000583379 298 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AC005899.2-201ENST00000584353 90 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.65□□□□□ -1.5
COL8A1P27658 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.65□□□□□ -1.5
COL8A1P27658 AP001485.1-201ENST00000604799 199 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 AC103705.1-201ENST00000619013 241 ntBASIC5.65□□□□□ -1.5
COL8A1P27658 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.65□□□□□ -1.5
COL8A1P27658 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 CDY11P-201ENST00000447168 1651 ntBASIC5.65□□□□□ -1.51
COL8A1P27658 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
COL8A1P27658 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.65□□□□□ -1.51
COL8A1P27658 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL8A1P27658 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL8A1P27658 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL8A1P27658 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL8A1P27658 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 RNU1-19P-201ENST00000363306 165 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 Y_RNA.200-201ENST00000364018 102 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 MIR585-201ENST00000384887 94 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL8A1P27658 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 DPPA2P3-201ENST00000411853 655 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.64□□□□□ -1.51
COL8A1P27658 BX284632.2-201ENST00000421091 399 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC012065.2-201ENST00000421295 375 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC233981.1-201ENST00000423224 461 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 GAPDHP58-201ENST00000438477 1006 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.64□□□□□ -1.51
COL8A1P27658 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AL359955.2-201ENST00000445380 353 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 FCF1P4-201ENST00000448326 183 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 OR7E116P-201ENST00000448529 957 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC026254.2-201ENST00000475295 371 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC108860.1-201ENST00000484521 383 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms