Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DMD-205ENST00000359836 7339 ntTSL 5 BASIC3.15□□□□□ -1.91
COL6A3P12111 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.14□□□□□ -1.91
COL6A3P12111 AP003117.2-201ENST00000606010 545 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.14□□□□□ -1.91
COL6A3P12111 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC3.14□□□□□ -1.91
COL6A3P12111 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL6A3P12111 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.14□□□□□ -1.91
COL6A3P12111 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
COL6A3P12111 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 RNA5SP425-201ENST00000410336 112 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 B3GNT2P1-201ENST00000434960 952 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 RPL37P4-201ENST00000448908 268 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL6A3P12111 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.14□□□□□ -1.91
COL6A3P12111 AC009570.1-201ENST00000609599 745 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 AC091905.1-201ENST00000624400 311 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL6A3P12111 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.14□□□□□ -1.91
COL6A3P12111 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL6A3P12111 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.14□□□□□ -1.91
COL6A3P12111 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.14□□□□□ -1.91
COL6A3P12111 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.14□□□□□ -1.91
COL6A3P12111 PLCE1P1-201ENST00000622094 305 ntBASIC3.14□□□□□ -1.91
COL6A3P12111 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL6A3P12111 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL6A3P12111 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL6A3P12111 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC3.14□□□□□ -1.91
COL6A3P12111 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 RPL21P75-201ENST00000396599 483 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 RPL21P1-201ENST00000399532 476 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 RPL21P28-201ENST00000401418 483 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 AL592114.1-201ENST00000403842 483 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 Z98742.3-201ENST00000418637 326 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.13□□□□□ -1.91
COL6A3P12111 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.13□□□□□ -1.91
COL6A3P12111 RPL21P16-201ENST00000495531 483 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 ARL4AP1-201ENST00000503220 705 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.13□□□□□ -1.91
COL6A3P12111 SCARNA17.1-201ENST00000516211 143 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 SCARNA17.2-201ENST00000516334 143 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.13□□□□□ -1.91
COL6A3P12111 SNORD91B-202ENST00000608459 222 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 OR7M1P-201ENST00000608946 533 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 SCARNA17.4-201ENST00000614296 143 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 AL356321.1-201ENST00000621360 228 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.13□□□□□ -1.91
COL6A3P12111 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC3.13□□□□□ -1.91
COL6A3P12111 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
COL6A3P12111 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 RNVU1-3-201ENST00000364313 161 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
COL6A3P12111 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.13□□□□□ -1.91
COL6A3P12111 ARL4AP3-201ENST00000441452 574 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 AC112653.1-201ENST00000443851 386 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 AC069540.1-201ENST00000446320 988 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 MTCO1P42-201ENST00000457379 726 ntBASIC3.13□□□□□ -1.91
COL6A3P12111 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL6A3P12111 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
COL6A3P12111 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL6A3P12111 CYCSP45-201ENST00000402289 315 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 GSTM3P2-201ENST00000412746 530 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 RPL23AP16-201ENST00000441715 421 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.12□□□□□ -1.91
COL6A3P12111 HMGB1P15-201ENST00000453854 435 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 METTL15P1-201ENST00000481421 1045 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.12□□□□□ -1.91
COL6A3P12111 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.12□□□□□ -1.91
COL6A3P12111 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.12□□□□□ -1.91
COL6A3P12111 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.12□□□□□ -1.91
COL6A3P12111 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.12□□□□□ -1.91
COL6A3P12111 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
COL6A3P12111 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC3.12□□□□□ -1.91
COL6A3P12111 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 RNU6-859P-201ENST00000362728 107 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 RNU1-112P-201ENST00000364401 164 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.12□□□□□ -1.91
COL6A3P12111 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.12□□□□□ -1.91
COL6A3P12111 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.12□□□□□ -1.91
COL6A3P12111 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.12□□□□□ -1.91
COL6A3P12111 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 AC007496.3-201ENST00000624987 3443 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL6A3P12111 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL6A3P12111 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms