Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 HMGN1P15-201ENST00000513870 295 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 SNORD116-30-201ENST00000516468 85 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 RN7SKP116-201ENST00000516902 319 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 RNU1-45P-201ENST00000517191 141 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC015917.1-201ENST00000579654 510 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 FAM60CP-201ENST00000591086 664 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC015802.5-201ENST00000607478 399 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC092628.2-201ENST00000622492 339 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 CR392039.4-201ENST00000624968 501 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 MIR4278-201ENST00000636094 69 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 MIR7153-201ENST00000637758 57 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC026951.1-201ENST00000559530 2459 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AL353743.4-201ENST00000422653 1547 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AC000367.1-201ENST00000452711 1766 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 AL356274.2-201ENST00000624379 3752 ntBASIC3.22□□□□□ -1.89
VPS29Q9UBQ0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 RNU4-35P-201ENST00000362588 141 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 RNA5SP197-201ENST00000363357 119 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 MIR153-1-201ENST00000384914 90 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 HMGB1P10-201ENST00000395823 563 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 EI24P2-201ENST00000397776 1076 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC069218.2-201ENST00000411665 344 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 RPL36AP36-201ENST00000418616 301 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC012065.2-201ENST00000421295 375 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 NIPA2P1-201ENST00000426223 976 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 RPS7P5-201ENST00000441482 581 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 HIGD1AP10-201ENST00000527837 282 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 EIF4EP5-201ENST00000528228 640 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 OR5B10P-201ENST00000532869 642 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AL389895.1-201ENST00000554127 252 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC055764.2-201ENST00000610089 670 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC008121.2-201ENST00000614647 523 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AL731566.2-201ENST00000618971 317 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 SNORD39.4-201ENST00000620099 78 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC127502.3-201ENST00000636170 1206 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AC009950.2-201ENST00000636548 183 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 AL133383.2-201ENST00000622958 2336 ntBASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS29Q9UBQ0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AL031736.2-201ENST00000426573 787 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 ETF1P3-201ENST00000430422 1160 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AL031663.1-201ENST00000437445 219 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 HMGB3P11-201ENST00000440127 604 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 HMGB3P8-201ENST00000449709 577 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 RPL23AP14-201ENST00000468281 468 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 RN7SL442P-201ENST00000473804 320 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AL133372.1-201ENST00000493565 745 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AL035404.1-201ENST00000497982 568 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 APOOP4-201ENST00000513530 597 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC026403.1-201ENST00000518938 295 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 MTCO1P49-201ENST00000523429 802 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AP004242.1-201ENST00000533701 349 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC006130.2-201ENST00000586202 326 ntBASIC3.2□□□□□ -1.9
VPS29Q9UBQ0 AC008507.1-201ENST00000587506 734 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms