Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RPS26P30-201ENST00000443431 335 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 HMGB1P16-201ENST00000447155 540 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 UBDP1-202ENST00000457888 382 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 OR9M1P-201ENST00000459641 921 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC005410.1-202ENST00000460347 485 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC011037.1-201ENST00000483964 558 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC022695.1-201ENST00000522089 237 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AP001636.2-201ENST00000525517 696 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 UBTFL10-201ENST00000528532 562 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC027287.1-201ENST00000553115 1453 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AL020997.3-201ENST00000602843 359 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 MTND3P19-201ENST00000603825 345 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC025588.2-201ENST00000604851 466 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 BNIP3P4-201ENST00000604946 565 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC055764.2-201ENST00000610089 670 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AL136295.6-201ENST00000610486 658 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC023043.4-201ENST00000612081 449 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 VN1R74P-201ENST00000613259 503 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC231759.1-201ENST00000616455 597 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 FP236240.3-201ENST00000623061 327 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AC109454.4-201ENST00000623411 649 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 LINC02211-204ENST00000642024 1070 ntBASIC4.08□□□□□ -1.76
SIX2Q9NPC8 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SIX2Q9NPC8 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 MTCO1P6-201ENST00000481192 1384 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 RNU6-1339P-201ENST00000363574 91 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC107081.1-201ENST00000414975 361 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 HMGB1P49-201ENST00000418882 569 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 RAC1P8-201ENST00000427086 527 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 NDUFB1P1-201ENST00000435191 180 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 HMGB1P45-201ENST00000435986 653 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 HSFY6P-201ENST00000445573 403 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 MTATP6P26-201ENST00000445926 662 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 DNAJC19P8-201ENST00000452887 259 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC091959.2-201ENST00000477363 321 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 RPL23AP44-201ENST00000482216 473 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC069528.1-202ENST00000482888 637 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC092593.2-201ENST00000513866 913 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 snoZ278.1-201ENST00000517059 112 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 NARSP2-201ENST00000518524 679 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC124293.1-201ENST00000530034 493 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 MTCO2P15-201ENST00000532655 656 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AL358913.1-201ENST00000554342 121 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC023813.2-201ENST00000564321 469 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 MIR4675-201ENST00000577898 77 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC008751.2-201ENST00000597885 980 ntBASIC4.07□□□□□ -1.76
SIX2Q9NPC8 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.07□□□□□ -1.76
SIX2Q9NPC8 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SIX2Q9NPC8 HSPA8P17-201ENST00000427029 1382 ntBASIC4.06□□□□□ -1.76
SIX2Q9NPC8 MTND4P10-201ENST00000446199 1363 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms