Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 Z99496.1-201ENST00000469424 1477 ntBASIC3.73□□□□□ -1.81
NKX3-1Q99801 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.73□□□□□ -1.81
NKX3-1Q99801 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-1Q99801 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC125257.1-201ENST00000560400 2930 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RNU6-1214P-201ENST00000363650 109 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RHOT1P2-201ENST00000366423 333 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 Y_RNA.465-201ENST00000384293 102 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 DSTNP4-201ENST00000399472 474 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 MTCO3P31-201ENST00000405526 789 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RPL23AP48-201ENST00000406913 488 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RPL23AP47-201ENST00000408017 460 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RNA5SP80-201ENST00000410475 111 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 NRBF2P2-201ENST00000413087 861 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 LUZP4P1-201ENST00000415420 344 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 USP9YP22-201ENST00000438971 294 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC092393.1-201ENST00000439625 742 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 RPL7P31-201ENST00000450192 724 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 NDUFA5P7-201ENST00000452914 242 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RPL21P71-201ENST00000465598 459 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC108734.3-201ENST00000481241 1165 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 PRELID3BP7-201ENST00000503606 469 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC083829.1-201ENST00000503756 657 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC025674.1-201ENST00000507074 324 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC090071.1-201ENST00000507713 644 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC006499.6-201ENST00000511169 607 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 FABP5P12-201ENST00000515543 389 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RNU6-488P-201ENST00000515918 99 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RN7SKP31-201ENST00000516354 278 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 SOD1P3-201ENST00000518682 454 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC009643.1-201ENST00000532030 391 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 DUXAP6-201ENST00000553858 601 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 GTF2IP8-201ENST00000560687 584 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 MIR4277-201ENST00000578298 84 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC022662.1-201ENST00000580252 331 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 DUXAP3-201ENST00000603616 594 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC005191.1-201ENST00000603950 358 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AL139344.1-201ENST00000605228 195 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AL133243.1-201ENST00000614487 366 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC073348.1-201ENST00000623002 331 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 AL049536.1-201ENST00000625043 744 ntBASIC3.72□□□□□ -1.81
NKX3-1Q99801 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
NKX3-1Q99801 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-1Q99801 AC107081.3-201ENST00000612715 2034 ntBASIC3.71□□□□□ -1.81
NKX3-1Q99801 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
NKX3-1Q99801 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.71□□□□□ -1.81
NKX3-1Q99801 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 RPL32P3-201ENST00000359025 275 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 RNU6-1066P-201ENST00000363573 105 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 RNU6-560P-201ENST00000364007 108 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 TAS2R15P-201ENST00000390674 928 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 RNU2-21P-201ENST00000410368 188 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 RNA5SP104-201ENST00000410989 118 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 HMGB1P49-201ENST00000418882 569 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 MTND2P16-201ENST00000419987 799 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 UQCRBP1-201ENST00000421129 336 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 MRPS36P1-201ENST00000421291 307 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 RPEP3-201ENST00000425462 676 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC016712.1-201ENST00000431088 378 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms