Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC011978.2-201ENST00000569835 2054 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL8A1P27658 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.66□□□□□ -1.5
COL8A1P27658 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 Y_RNA.19-201ENST00000362462 99 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 SNORA62.2-201ENST00000364672 152 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RNU6-343P-201ENST00000364709 104 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RNU6-806P-201ENST00000365147 105 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.66□□□□□ -1.5
COL8A1P27658 RNU6-1117P-201ENST00000384525 104 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RNU6-1151P-201ENST00000384684 107 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 MIR450B-201ENST00000401182 78 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RNU6-272P-201ENST00000411028 104 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 Y_RNA.793-201ENST00000411222 111 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 MED13P1-201ENST00000428342 171 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 C4BPAP2-201ENST00000428434 478 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AP000281.1-201ENST00000444036 316 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.66□□□□□ -1.5
COL8A1P27658 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 NANOGP10-201ENST00000453325 895 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC026410.2-201ENST00000460281 156 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RPL21P71-201ENST00000465598 459 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC011476.1-201ENST00000466725 307 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RN7SL860P-201ENST00000473738 223 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC093270.2-201ENST00000486157 792 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC090453.1-201ENST00000495560 436 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC116562.3-201ENST00000506136 177 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC021146.3-201ENST00000511911 260 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 SNORA40.15-201ENST00000516884 107 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 RNU6-570P-201ENST00000517051 105 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC068587.5-201ENST00000528506 175 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.66□□□□□ -1.5
COL8A1P27658 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 OR11H5P-201ENST00000554039 926 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC024614.2-201ENST00000577584 372 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.66□□□□□ -1.5
COL8A1P27658 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 AL513218.1-201ENST00000606527 391 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AC010424.2-201ENST00000607594 443 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AL352984.2-201ENST00000611153 546 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 uc_338.12-201ENST00000616344 181 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 AL450226.2-201ENST00000622913 439 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 PFKM-232ENST00000629846 381 ntTSL 4 BASIC5.66□□□□□ -1.5
COL8A1P27658 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 AC023245.2-201ENST00000530760 2978 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.66□□□□□ -1.5
COL8A1P27658 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.66□□□□□ -1.5
COL8A1P27658 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.66□□□□□ -1.5
COL8A1P27658 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 AC092821.3-202ENST00000641304 2767 ntBASIC5.66□□□□□ -1.5
COL8A1P27658 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC5.66□□□□□ -1.5
COL8A1P27658 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL8A1P27658 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC5.66□□□□□ -1.5
COL8A1P27658 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.65□□□□□ -1.5
COL8A1P27658 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC5.65□□□□□ -1.5
COL8A1P27658 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC5.65□□□□□ -1.5
COL8A1P27658 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
COL8A1P27658 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL8A1P27658 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC5.65□□□□□ -1.5
COL8A1P27658 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms