Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 RNU4-7P-201ENST00000364758 141 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA1P55317 AL392003.1-201ENST00000434394 243 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA1P55317 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA1P55317 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA1P55317 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC092641.1-201ENST00000440229 772 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC069277.2-201ENST00000454211 432 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA1P55317 HMGN1P8-201ENST00000463578 288 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 RPL7P38-201ENST00000488396 739 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC091917.2-201ENST00000505002 744 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXA1P55317 OR8X1P-201ENST00000534542 869 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC007458.1-201ENST00000542812 373 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 MIR3158-1-201ENST00000583596 81 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 BNIP3P22-201ENST00000593399 556 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC007620.3-201ENST00000608131 497 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 AC006133.1-201ENST00000617106 264 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 RMST_5.1-201ENST00000618704 126 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC012442.3-202ENST00000636742 206 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 OR8B1P-202ENST00000641132 1178 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 AL592494.2-201ENST00000425455 1548 ntBASIC3.17□□□□□ -1.9
FOXA1P55317 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA1P55317 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA1P55317 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 BX005019.1-201ENST00000561881 1810 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA1P55317 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 MIR148B-201ENST00000362252 99 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 RNU6-891P-201ENST00000384280 111 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 RNA5SP171-201ENST00000391071 115 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA1P55317 PTP4A1P5-201ENST00000420305 455 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC007389.2-201ENST00000434630 306 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 USP9YP7-201ENST00000436723 430 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA1P55317 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA1P55317 Z99127.3-201ENST00000448158 395 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 CCRL1P1-201ENST00000449542 1053 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 USP9YP32-201ENST00000452432 430 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.16□□□□□ -1.9
FOXA1P55317 RPL21P13-201ENST00000488305 481 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA1P55317 AC093663.1-201ENST00000497190 394 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC114967.1-201ENST00000504890 259 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC068657.1-201ENST00000520807 306 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.16□□□□□ -1.9
FOXA1P55317 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA1P55317 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA1P55317 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA1P55317 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA1P55317 MIR3186-201ENST00000577404 85 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC022146.1-201ENST00000595307 847 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC010680.3-201ENST00000604215 520 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AL162713.1-201ENST00000604480 262 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 AC012531.5-201ENST00000611375 151 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 CR392039.5-201ENST00000623201 510 ntBASIC3.16□□□□□ -1.9
FOXA1P55317 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA1P55317 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA1P55317 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.15□□□□□ -1.9
FOXA1P55317 AC107081.3-201ENST00000612715 2034 ntBASIC3.15□□□□□ -1.9
FOXA1P55317 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA1P55317 MTND5P24-201ENST00000438892 1767 ntBASIC3.15□□□□□ -1.9
FOXA1P55317 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA1P55317 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
FOXA1P55317 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA1P55317 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA1P55317 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 MIR554-201ENST00000384874 96 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 RNU6ATAC-201ENST00000408749 126 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 HSFY4P-201ENST00000415994 1181 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 MTCYBP7-201ENST00000419540 1134 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA1P55317 BX842559.1-201ENST00000419615 532 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 CLIC4P1-201ENST00000453177 535 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AL136097.1-201ENST00000456945 913 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC034236.1-201ENST00000469891 373 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms