Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.33□□□□□ -1.88
HTTP42858 RN7SKP244-201ENST00000516513 307 ntBASIC3.33□□□□□ -1.88
HTTP42858 AC099489.2-201ENST00000574976 260 ntBASIC3.33□□□□□ -1.88
HTTP42858 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.33□□□□□ -1.88
HTTP42858 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.33□□□□□ -1.88
HTTP42858 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HTTP42858 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 MIR196B-201ENST00000384852 84 ntBASIC3.33□□□□□ -1.88
HTTP42858 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.33□□□□□ -1.88
HTTP42858 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.33□□□□□ -1.88
HTTP42858 AL031736.2-201ENST00000426573 787 ntBASIC3.33□□□□□ -1.88
HTTP42858 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
HTTP42858 AC018797.3-201ENST00000513388 1241 ntBASIC3.33□□□□□ -1.88
HTTP42858 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.33□□□□□ -1.88
HTTP42858 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.33□□□□□ -1.88
HTTP42858 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.33□□□□□ -1.88
HTTP42858 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.33□□□□□ -1.88
HTTP42858 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.33□□□□□ -1.88
HTTP42858 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HTTP42858 RNU1-112P-201ENST00000364401 164 ntBASIC3.33□□□□□ -1.88
HTTP42858 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.33□□□□□ -1.88
HTTP42858 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.33□□□□□ -1.88
HTTP42858 MRPS18BP2-201ENST00000434310 759 ntBASIC3.33□□□□□ -1.88
HTTP42858 PRDX3P4-201ENST00000470828 747 ntBASIC3.33□□□□□ -1.88
HTTP42858 RPS4XP6-201ENST00000477670 797 ntBASIC3.33□□□□□ -1.88
HTTP42858 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.33□□□□□ -1.88
HTTP42858 AC107934.2-201ENST00000518653 310 ntBASIC3.33□□□□□ -1.88
HTTP42858 AC025811.1-201ENST00000604312 472 ntBASIC3.33□□□□□ -1.88
HTTP42858 AL354950.1-201ENST00000614150 568 ntBASIC3.33□□□□□ -1.88
HTTP42858 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HTTP42858 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.32□□□□□ -1.88
HTTP42858 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HTTP42858 USP12PY-201ENST00000427677 1064 ntBASIC3.32□□□□□ -1.88
HTTP42858 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.32□□□□□ -1.88
HTTP42858 DPRXP4-201ENST00000578053 568 ntBASIC3.32□□□□□ -1.88
HTTP42858 AL392112.1-201ENST00000605115 829 ntBASIC3.32□□□□□ -1.88
HTTP42858 uc_338.1-201ENST00000612113 180 ntBASIC3.32□□□□□ -1.88
HTTP42858 AL669942.2-201ENST00000620352 697 ntBASIC3.32□□□□□ -1.88
HTTP42858 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
HTTP42858 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HTTP42858 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HTTP42858 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HTTP42858 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
HTTP42858 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.32□□□□□ -1.88
HTTP42858 CST9LP2-201ENST00000437612 320 ntBASIC3.32□□□□□ -1.88
HTTP42858 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.32□□□□□ -1.88
HTTP42858 RPS20P22-201ENST00000473700 357 ntBASIC3.32□□□□□ -1.88
HTTP42858 SNORA70.19-201ENST00000516717 90 ntBASIC3.32□□□□□ -1.88
HTTP42858 AP000859.1-201ENST00000525536 307 ntBASIC3.32□□□□□ -1.88
HTTP42858 AADACP1-206ENST00000561502 1193 ntBASIC3.32□□□□□ -1.88
HTTP42858 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.32□□□□□ -1.88
HTTP42858 SNORD53-201ENST00000579969 78 ntBASIC3.32□□□□□ -1.88
HTTP42858 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 ZNF658B-202ENST00000615961 3375 ntBASIC3.31□□□□□ -1.88
HTTP42858 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.31□□□□□ -1.88
HTTP42858 AL158827.2-201ENST00000602494 330 ntBASIC3.31□□□□□ -1.88
HTTP42858 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HTTP42858 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.31□□□□□ -1.88
HTTP42858 AL691447.3-201ENST00000635020 330 ntBASIC3.31□□□□□ -1.88
HTTP42858 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 DMD-211ENST00000378707 7410 ntTSL 5 BASIC3.31□□□□□ -1.88
HTTP42858 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HTTP42858 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
HTTP42858 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.31□□□□□ -1.88
HTTP42858 GNG5P5-201ENST00000420444 220 ntBASIC3.31□□□□□ -1.88
HTTP42858 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.31□□□□□ -1.88
HTTP42858 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.31□□□□□ -1.88
HTTP42858 AC015917.1-201ENST00000579654 510 ntBASIC3.31□□□□□ -1.88
HTTP42858 AC008638.3-201ENST00000603341 463 ntBASIC3.31□□□□□ -1.88
HTTP42858 AC015871.2-201ENST00000603605 948 ntBASIC3.31□□□□□ -1.88
HTTP42858 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.31□□□□□ -1.88
HTTP42858 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HTTP42858 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC3.31□□□□□ -1.88
HTTP42858 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.3□□□□□ -1.88
HTTP42858 RNA5SP146-201ENST00000410743 123 ntBASIC3.3□□□□□ -1.88
HTTP42858 TRGV5P-201ENST00000419915 354 ntBASIC3.3□□□□□ -1.88
HTTP42858 DUTP6-201ENST00000425573 462 ntBASIC3.3□□□□□ -1.88
HTTP42858 AL139415.2-201ENST00000431968 163 ntBASIC3.3□□□□□ -1.88
HTTP42858 NIPA2P5-201ENST00000452282 464 ntBASIC3.3□□□□□ -1.88
HTTP42858 NECAP1P2-201ENST00000455668 727 ntBASIC3.3□□□□□ -1.88
HTTP42858 RNA5SP154-201ENST00000516193 111 ntBASIC3.3□□□□□ -1.88
HTTP42858 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.3□□□□□ -1.88
HTTP42858 CR381670.1-201ENST00000624291 1693 ntBASIC3.3□□□□□ -1.88
HTTP42858 AC063923.1-201ENST00000478982 1619 ntBASIC3.3□□□□□ -1.88
HTTP42858 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.3□□□□□ -1.88
HTTP42858 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
HTTP42858 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HTTP42858 RNA5SP21-201ENST00000410917 96 ntBASIC3.3□□□□□ -1.88
HTTP42858 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.3□□□□□ -1.88
HTTP42858 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms