Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SHMT2P34897 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SHMT2P34897 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
SHMT2P34897 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
SHMT2P34897 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SHMT2P34897 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 RNU6-792P-201ENST00000363490 107 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 RNU6-1005P-201ENST00000384519 107 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 U8.11-201ENST00000384699 133 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 U8.12-201ENST00000384701 133 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 MTATP6P11-201ENST00000428071 670 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 OR4F13P-201ENST00000428478 931 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 PTP4A1P3-201ENST00000433661 420 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 RNFT1P2-201ENST00000443064 757 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 RPS29P31-201ENST00000446147 164 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AL133547.1-201ENST00000448546 220 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 U8.18-201ENST00000459285 133 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 RNU7-170P-201ENST00000459303 61 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 ACTR3P3-201ENST00000480448 893 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.62□□□□□ -1.83
SHMT2P34897 UBE2CP3-201ENST00000502715 450 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.62□□□□□ -1.83
SHMT2P34897 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 SNORA70.14-201ENST00000516205 110 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 RNA5SP309-201ENST00000516670 106 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 PAICSP4-201ENST00000517543 1253 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.62□□□□□ -1.83
SHMT2P34897 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 AL121766.1-201ENST00000547436 487 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.62□□□□□ -1.83
SHMT2P34897 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 CYP2C60P-201ENST00000566088 139 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AC034105.4-201ENST00000568304 277 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.62□□□□□ -1.83
SHMT2P34897 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.62□□□□□ -1.83
SHMT2P34897 AC005972.3-201ENST00000606304 481 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 AC008121.2-201ENST00000614647 523 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 AC245389.2-201ENST00000616023 576 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AC242843.1-201ENST00000618702 573 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 AC083865.1-201ENST00000636634 831 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SHMT2P34897 MTND4P31-201ENST00000425607 1343 ntBASIC3.62□□□□□ -1.83
SHMT2P34897 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHMT2P34897 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.62□□□□□ -1.83
SHMT2P34897 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SHMT2P34897 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SHMT2P34897 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
SHMT2P34897 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SHMT2P34897 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SHMT2P34897 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHMT2P34897 SNORA62.3-201ENST00000365110 153 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
SHMT2P34897 AL391417.1-201ENST00000404100 426 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AL590290.1-201ENST00000405336 380 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 RNU2-6P-201ENST00000411404 190 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.61□□□□□ -1.83
SHMT2P34897 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.61□□□□□ -1.83
SHMT2P34897 AC018644.1-201ENST00000429934 551 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 TPTE2P6-202ENST00000445572 1007 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 EXTL2P1-201ENST00000446218 416 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.61□□□□□ -1.83
SHMT2P34897 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
SHMT2P34897 AC011037.1-201ENST00000483964 558 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.61□□□□□ -1.83
SHMT2P34897 MTND3P24-201ENST00000506306 329 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 SAP18P1-201ENST00000512058 390 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC133963.2-201ENST00000513686 578 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 RN7SKP209-201ENST00000516888 304 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.61□□□□□ -1.83
SHMT2P34897 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.61□□□□□ -1.83
SHMT2P34897 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.61□□□□□ -1.83
SHMT2P34897 OR5AK3P-201ENST00000527486 1297 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHMT2P34897 POLR2KP1-201ENST00000553226 168 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.61□□□□□ -1.83
SHMT2P34897 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.61□□□□□ -1.83
SHMT2P34897 AC115621.1-201ENST00000604653 858 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC012531.5-201ENST00000611375 151 ntBASIC3.61□□□□□ -1.83
SHMT2P34897 AC079684.1-201ENST00000621405 437 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms