Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RNU6-932P-201ENST00000391108 106 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RNU6-272P-201ENST00000411028 104 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL591419.1-201ENST00000427423 339 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 HMGB1P45-201ENST00000435986 653 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RPL23AP15-201ENST00000450202 459 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC010469.1-201ENST00000463864 576 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RPS26P15-201ENST00000488067 348 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 MTCO3P27-201ENST00000514397 196 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC008802.1-201ENST00000519121 791 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC090079.2-201ENST00000575289 768 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL390816.3-201ENST00000604527 1066 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC010680.4-201ENST00000605334 543 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC113194.1-201ENST00000606037 500 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AP003392.5-201ENST00000607857 415 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC080188.3-201ENST00000624842 748 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 BDP1P-201ENST00000582658 1990 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL592494.2-201ENST00000425455 1548 ntBASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC016716.1-201ENST00000265882 708 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 RNU6-1293P-201ENST00000384077 107 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 U6.112-201ENST00000384129 70 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 RNU6-207P-201ENST00000384137 107 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC092647.1-201ENST00000420654 287 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC008065.1-201ENST00000428525 348 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 FO393414.1-201ENST00000428697 1184 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 NANOGP6-201ENST00000429190 847 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 OR51B8P-201ENST00000449892 769 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 HMGB3P22-202ENST00000451823 572 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 UBDP1-202ENST00000457888 382 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AL133162.1-201ENST00000463228 453 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 RN7SL542P-201ENST00000467147 294 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC108941.1-201ENST00000502853 530 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 RNA5SP164-201ENST00000516533 110 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC010680.3-201ENST00000604215 520 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AL137849.1-201ENST00000604767 169 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 RNU6-156P-201ENST00000621869 107 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AL590396.4-201ENST00000636779 956 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 AC009452.1-201ENST00000640823 606 ntBASIC3.84□□□□□ -1.79
LHX3Q9UBR4 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LHX3Q9UBR4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.84□□□□□ -1.8
LHX3Q9UBR4 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.84□□□□□ -1.8
LHX3Q9UBR4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
LHX3Q9UBR4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.84□□□□□ -1.8
LHX3Q9UBR4 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.84□□□□□ -1.8
LHX3Q9UBR4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 RNA5SP124-201ENST00000362739 110 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 GCNT6-201ENST00000379591 934 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 HSPD1P16-201ENST00000402302 394 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 LAP3P1-201ENST00000403648 294 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AL355615.1-201ENST00000406187 641 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 RN7SKP202-201ENST00000410439 330 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 SNORA57.3-201ENST00000411095 141 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 NUP35P2-201ENST00000416748 943 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms