Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 AC010468.1-201ENST00000461022 817 ntBASIC3.17□□□□□ -1.9
CCDC88CQ9P219 S100A11P2-201ENST00000467589 312 ntBASIC3.17□□□□□ -1.9
CCDC88CQ9P219 RN7SL601P-201ENST00000471221 293 ntBASIC3.17□□□□□ -1.9
CCDC88CQ9P219 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.17□□□□□ -1.9
CCDC88CQ9P219 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88CQ9P219 AC027281.1-201ENST00000574178 758 ntBASIC3.17□□□□□ -1.9
CCDC88CQ9P219 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC88CQ9P219 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC88CQ9P219 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 MIR34B-201ENST00000385076 84 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 RNA5SP239-201ENST00000410218 129 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 RNU6-233P-201ENST00000410845 141 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 Z92545.1-201ENST00000411782 234 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 GLRXP1-201ENST00000423261 334 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC006539.3-201ENST00000454258 129 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 RN7SL442P-201ENST00000473804 320 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC021678.1-201ENST00000505195 936 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AL121839.1-201ENST00000556233 1185 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AL365503.1-201ENST00000605247 905 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AL365400.2-201ENST00000605604 902 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 OR2BH1P-201ENST00000608850 864 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AL353746.1-201ENST00000566293 6881 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 AC017071.1-201ENST00000564407 2204 ntBASIC3.16□□□□□ -1.9
CCDC88CQ9P219 U3.11-201ENST00000364476 212 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RNU6-1320P-201ENST00000390838 107 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RNU6-1269P-201ENST00000391139 107 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RPS29P4-201ENST00000414733 161 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RPF2P1-201ENST00000424137 906 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 SNORA59A-201ENST00000459326 152 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RNU6-599P-201ENST00000459383 107 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RNU6-1193P-201ENST00000459461 107 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.15□□□□□ -1.9
CCDC88CQ9P219 AL162713.1-201ENST00000604480 262 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.15□□□□□ -1.9
CCDC88CQ9P219 AC008121.2-201ENST00000614647 523 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 AC009464.1-201ENST00000615731 469 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 ATP5A1P2-202ENST00000616464 443 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RNU6-368P-201ENST00000620928 107 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 RNU6-538P-201ENST00000622329 107 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 AC067852.7-201ENST00000623270 535 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 MIR7153-201ENST00000637758 57 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC88CQ9P219 NMD3P1-201ENST00000439704 1488 ntBASIC3.15□□□□□ -1.9
CCDC88CQ9P219 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 RLIMP2-201ENST00000427891 1563 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 RNU1-87P-201ENST00000363727 170 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 RNU6-729P-201ENST00000384399 107 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AL122016.1-201ENST00000403365 367 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 MTND4LP12-201ENST00000448237 295 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AP002371.1-201ENST00000463604 433 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AC098583.1-201ENST00000480875 255 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AC092045.1-201ENST00000495716 1231 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 RNU6-943P-201ENST00000516960 98 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 HIGD1AP18-201ENST00000520730 278 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AL139174.1-201ENST00000531489 886 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 BMS1P7-201ENST00000602440 1052 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 MIR7112-201ENST00000616126 65 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 AC073476.4-201ENST00000628409 72 ntBASIC3.15□□□□□ -1.91
CCDC88CQ9P219 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC88CQ9P219 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88CQ9P219 CUL4AP1-201ENST00000514750 1863 ntBASIC3.14□□□□□ -1.91
CCDC88CQ9P219 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC88CQ9P219 RNA5SP293-201ENST00000410527 113 ntBASIC3.14□□□□□ -1.91
CCDC88CQ9P219 AC245517.2-201ENST00000442890 346 ntBASIC3.14□□□□□ -1.91
CCDC88CQ9P219 AC099063.2-201ENST00000446360 662 ntBASIC3.14□□□□□ -1.91
CCDC88CQ9P219 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms