Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FAM35BP-202ENST00000497389 3337 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 OR5H2-201ENST00000355273 945 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 RNU4-47P-201ENST00000410876 114 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 OR6K4P-201ENST00000423179 955 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AL353705.1-201ENST00000433468 480 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AL121890.1-201ENST00000435457 205 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 ACTG1P13-201ENST00000486987 1043 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 RPL23AP73-201ENST00000492507 471 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 RNU6-964P-201ENST00000516524 69 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 SCARNA20.6-201ENST00000517251 106 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 NDUFB9P3-201ENST00000521269 501 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 MIR3162-201ENST00000581818 82 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AC124856.1-201ENST00000600819 896 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AL049844.2-201ENST00000604280 628 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AL590240.3-201ENST00000621416 943 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC138393.1-206ENST00000540997 1886 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AL356968.1-201ENST00000416622 474 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 OOSP1P1-201ENST00000423265 274 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC011242.1-201ENST00000433596 1158 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC108734.1-201ENST00000439549 399 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC133473.1-201ENST00000455173 299 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 KCTD9P6-201ENST00000522306 950 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 AC136601.2-201ENST00000604356 474 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 CEP170P1-201ENST00000502249 4587 ntBASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CCDC88AQ3V6T2 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 AC017071.1-201ENST00000564407 2204 ntBASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 NUP35P1-201ENST00000422734 947 ntBASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 HMGB1P6-201ENST00000569046 646 ntBASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 VN1R90P-201ENST00000595717 726 ntBASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 CDC27P2-201ENST00000425026 1922 ntBASIC4.03□□□□□ -1.76
CCDC88AQ3V6T2 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 AL391417.1-201ENST00000404100 426 ntBASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 RAC1P3-201ENST00000416129 580 ntBASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 AC010374.2-201ENST00000512933 535 ntBASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 MIR4769-201ENST00000584126 77 ntBASIC4.03□□□□□ -1.77
CCDC88AQ3V6T2 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 MTCO1P22-201ENST00000604619 1360 ntBASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 Z82217.1-201ENST00000625157 8149 ntBASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 MIR422A-201ENST00000362286 90 ntBASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 RN7SKP56-201ENST00000410513 331 ntBASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 AC110794.1-201ENST00000505816 425 ntBASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 NRBF2P5-201ENST00000603087 788 ntBASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC88AQ3V6T2 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 XGY1-201ENST00000381172 446 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 SKP1P1-201ENST00000438081 489 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 RPS4XP13-201ENST00000483219 789 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms