Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MTCO3P31-201ENST00000405526 789 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RN7SKP267-201ENST00000410381 285 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC140479.3-201ENST00000418944 1126 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 LINC00993-201ENST00000420453 540 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RGS17P1-201ENST00000423358 553 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 IFNNP1-201ENST00000429219 553 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC010881.1-201ENST00000433830 235 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 GOT2P5-201ENST00000433995 546 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 B3GNT2P1-201ENST00000434960 952 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC093155.1-201ENST00000440164 826 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 PTMAP3-201ENST00000447474 330 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 USP9YP25-201ENST00000457708 443 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 MTND2P14-201ENST00000482139 351 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RNU1-6P-201ENST00000516290 144 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 MTCYBP27-201ENST00000555160 670 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC093519.1-201ENST00000566109 298 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RN7SL802P-201ENST00000577858 299 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC012468.1-201ENST00000604888 430 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 IMMP1LP1-201ENST00000605170 488 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 LINC00901.1-201ENST00000617252 152 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AP002791.1-201ENST00000623291 381 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 AC026634.1-201ENST00000634369 198 ntBASIC4.39□□□□□ -1.71
COL28A1Q2UY09 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.39□□□□□ -1.71
COL28A1Q2UY09 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 DHX9P1-201ENST00000436565 3076 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 SAGE4P-201ENST00000442271 3381 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RNA5SP366-201ENST00000365454 123 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 SNORA9-201ENST00000384215 133 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 Y_RNA.465-201ENST00000384293 102 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RNU1-82P-201ENST00000390851 165 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AL078604.1-201ENST00000404609 466 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AL133264.1-201ENST00000407157 562 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RN7SKP177-201ENST00000410567 355 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AL160275.2-201ENST00000412010 394 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC107081.1-201ENST00000414975 361 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC069157.1-201ENST00000421749 137 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 GTF2IP23-201ENST00000423746 351 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RPL23AP38-201ENST00000423801 469 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RPL30P3-201ENST00000424262 333 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC007389.2-201ENST00000434630 306 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 NMNAT1P2-201ENST00000435192 860 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 COX7BP2-201ENST00000437976 242 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC241584.1-201ENST00000438469 1241 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RPS26P56-201ENST00000444468 240 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC068587.2-201ENST00000478386 781 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RNU5A-4P-201ENST00000516588 111 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 MYL12AP1-201ENST00000518490 515 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 ARL2BPP5-201ENST00000523141 481 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC005832.3-201ENST00000537929 631 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC093249.4-201ENST00000564755 259 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 MIR4286-201ENST00000580651 93 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 CLIC4P2-201ENST00000601934 717 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC097478.2-201ENST00000610572 514 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms