Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RNA5SP308-201ENST00000362532 115 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RNU6-1252P-201ENST00000363054 104 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 Y_RNA.158-201ENST00000363651 101 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC092634.1-201ENST00000366505 199 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL136372.1-201ENST00000403060 228 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL139397.2-201ENST00000404529 772 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RNU6-985P-201ENST00000410182 104 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC009310.1-201ENST00000414414 451 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL139184.1-202ENST00000422303 222 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL035666.1-201ENST00000446195 348 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 DHFRP3-201ENST00000455595 559 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC009567.2-201ENST00000502989 349 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RNU6-123P-201ENST00000516163 102 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RNU6-256P-201ENST00000516747 97 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 IGKV1D-22-201ENST00000518953 324 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC090136.1-201ENST00000520009 240 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 SULT1C2P2-201ENST00000562517 294 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC233702.7-202ENST00000582941 211 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RPL29P33-201ENST00000587474 316 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 NF1P5-201ENST00000588287 448 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL670379.11-201ENST00000604059 253 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL670379.10-201ENST00000604330 253 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL670379.12-201ENST00000605291 253 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL670379.9-201ENST00000605428 253 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL627230.1-201ENST00000613077 211 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL590099.1-201ENST00000615276 138 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AC011155.2-201ENST00000623202 216 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 USP44-208ENST00000552440 1818 ntTSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AL442639.1-201ENST00000625030 1899 ntBASIC6.22□□□□□ -1.41
PCDHGA11Q9Y5H2 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 AL606537.1-201ENST00000607258 2011 ntBASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 AL049641.1-201ENST00000441055 1948 ntBASIC6.21□□□□□ -1.41
PCDHGA11Q9Y5H2 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 Y_RNA.149-201ENST00000363558 117 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 MIR568-201ENST00000385036 95 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 EIF4E2P1-201ENST00000393781 255 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 RN7SKP58-201ENST00000411010 305 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 RNA5SP155-201ENST00000411154 129 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 RPS12P24-201ENST00000412619 387 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC069213.2-201ENST00000420238 366 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 ACTR3BP6-201ENST00000422332 1241 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC092013.1-201ENST00000438795 332 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC083855.1-201ENST00000440041 258 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 COL11A2P1-205ENST00000441798 676 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AL162395.1-201ENST00000457882 422 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC011476.1-201ENST00000466725 307 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC093870.1-201ENST00000506837 213 ntBASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
PCDHGA11Q9Y5H2 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms