Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL049634.3-201ENST00000604968 457 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AC107308.1-201ENST00000615897 301 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 MIR7154-201ENST00000620673 73 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AC012442.3-202ENST00000636742 206 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 MTCO1P24-201ENST00000515438 1558 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC067945.1-201ENST00000342609 618 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 SNORA60-201ENST00000362396 134 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LAP3P1-201ENST00000403648 294 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 SNORA57.3-201ENST00000411095 141 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AL158050.1-201ENST00000416077 457 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 RPL23AP89-201ENST00000439324 255 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 HMGN2P21-201ENST00000447764 270 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AL121877.1-201ENST00000453704 622 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 ACTR3P3-201ENST00000480448 893 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC026726.1-201ENST00000512859 601 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC016065.2-201ENST00000514530 444 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 RNU6-488P-201ENST00000515918 99 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 RNA5SP309-201ENST00000516670 106 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 HMGB1P1-201ENST00000522557 636 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AP000889.1-201ENST00000530968 660 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 EIF5A2P1-201ENST00000564027 460 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 MTCYBP28-201ENST00000566728 1132 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 MTND6P33-201ENST00000571794 183 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 VN1R88P-201ENST00000596787 292 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC078899.5-201ENST00000612475 178 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 uc_338.32-201ENST00000615087 172 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC090246.1-201ENST00000616499 426 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HDDC3Q8N4P3 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 MTND5P28-201ENST00000438005 1594 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 MIR1250-201ENST00000408098 113 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC069218.2-201ENST00000411665 344 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 RPS23P10-201ENST00000416185 486 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 KRR1P1-201ENST00000419430 803 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 RPL36P19-201ENST00000430744 301 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC069285.2-201ENST00000440210 275 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC010469.1-201ENST00000463864 576 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC078817.1-201ENST00000492623 435 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 RPL29P14-201ENST00000495837 428 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 DSTNP2-201ENST00000504533 515 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AC112518.2-201ENST00000508565 425 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 RNU2-58P-201ENST00000516403 183 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 MYL12AP1-201ENST00000518490 515 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 DUXAP2-201ENST00000519198 589 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 UBTFL9-201ENST00000534504 1148 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 AL121834.1-201ENST00000572284 509 ntBASIC4.1□□□□□ -1.75
HDDC3Q8N4P3 RPL23AP87-202ENST00000573039 466 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms