Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ADAM5-202ENST00000399789 1942 ntBASIC5.91□□□□□ -1.46
LIG3P49916 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
LIG3P49916 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIG3P49916 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LIG3P49916 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LIG3P49916 AC010928.1-201ENST00000592477 1447 ntBASIC5.91□□□□□ -1.46
LIG3P49916 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.91□□□□□ -1.46
LIG3P49916 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
LIG3P49916 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
LIG3P49916 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
LIG3P49916 RNU6-853P-201ENST00000364306 107 ntBASIC5.9□□□□□ -1.46
LIG3P49916 RNU6-343P-201ENST00000364709 104 ntBASIC5.9□□□□□ -1.46
LIG3P49916 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
LIG3P49916 AL133482.1-201ENST00000415988 498 ntBASIC5.9□□□□□ -1.46
LIG3P49916 SNRPEP10-201ENST00000420249 274 ntBASIC5.9□□□□□ -1.46
LIG3P49916 MTCO2P5-201ENST00000422621 426 ntBASIC5.9□□□□□ -1.46
LIG3P49916 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
LIG3P49916 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 OR51AB1P-201ENST00000429046 620 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.9□□□□□ -1.46
LIG3P49916 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.9□□□□□ -1.46
LIG3P49916 SNRPGP6-201ENST00000451124 220 ntBASIC5.9□□□□□ -1.46
LIG3P49916 RPS20P32-201ENST00000456044 356 ntBASIC5.9□□□□□ -1.46
LIG3P49916 UBFD1P1-201ENST00000473259 814 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AP000893.1-201ENST00000474462 794 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.9□□□□□ -1.46
LIG3P49916 RNU6-513P-201ENST00000516104 104 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
LIG3P49916 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.9□□□□□ -1.46
LIG3P49916 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.9□□□□□ -1.46
LIG3P49916 OR5AN2P-201ENST00000534535 896 ntBASIC5.9□□□□□ -1.46
LIG3P49916 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.9□□□□□ -1.46
LIG3P49916 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.9□□□□□ -1.46
LIG3P49916 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.9□□□□□ -1.46
LIG3P49916 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.9□□□□□ -1.46
LIG3P49916 MIR3614-201ENST00000581261 86 ntBASIC5.9□□□□□ -1.46
LIG3P49916 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.9□□□□□ -1.46
LIG3P49916 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.9□□□□□ -1.46
LIG3P49916 BX664608.1-201ENST00000610519 487 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AL139099.4-201ENST00000614802 114 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AC009159.1-201ENST00000618386 642 ntBASIC5.9□□□□□ -1.46
LIG3P49916 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.9□□□□□ -1.46
LIG3P49916 AP005431.1-201ENST00000618479 319 ntBASIC5.9□□□□□ -1.46
LIG3P49916 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIG3P49916 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIG3P49916 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.9□□□□□ -1.47
LIG3P49916 RPS4XP5-202ENST00000449995 1334 ntBASIC5.9□□□□□ -1.47
LIG3P49916 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.9□□□□□ -1.47
LIG3P49916 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIG3P49916 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.9□□□□□ -1.47
LIG3P49916 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.89□□□□□ -1.47
LIG3P49916 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.89□□□□□ -1.47
LIG3P49916 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 RNA5SP500-201ENST00000364486 119 ntBASIC5.89□□□□□ -1.47
LIG3P49916 Y_RNA.279-201ENST00000364763 95 ntBASIC5.89□□□□□ -1.47
LIG3P49916 XGY1-201ENST00000381172 446 ntBASIC5.89□□□□□ -1.47
LIG3P49916 RNA5SP284-201ENST00000384547 118 ntBASIC5.89□□□□□ -1.47
LIG3P49916 snosnR66.1-201ENST00000391095 99 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AL031985.1-201ENST00000392713 418 ntBASIC5.89□□□□□ -1.47
LIG3P49916 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AL359704.1-201ENST00000411586 781 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.89□□□□□ -1.47
LIG3P49916 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.89□□□□□ -1.47
LIG3P49916 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 OR10T1P-201ENST00000424327 947 ntBASIC5.89□□□□□ -1.47
LIG3P49916 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.89□□□□□ -1.47
LIG3P49916 MTND6P12-201ENST00000428247 522 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.89□□□□□ -1.47
LIG3P49916 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.89□□□□□ -1.47
LIG3P49916 RPS12P17-201ENST00000438591 377 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 HSPE1P28-201ENST00000443139 211 ntBASIC5.89□□□□□ -1.47
LIG3P49916 RAD23BP3-201ENST00000454157 1152 ntBASIC5.89□□□□□ -1.47
LIG3P49916 PFN1P6-201ENST00000476786 399 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.89□□□□□ -1.47
LIG3P49916 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.89□□□□□ -1.47
LIG3P49916 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.89□□□□□ -1.47
LIG3P49916 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 AC079600.1-201ENST00000550326 297 ntBASIC5.89□□□□□ -1.47
LIG3P49916 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.89□□□□□ -1.47
LIG3P49916 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.89□□□□□ -1.47
LIG3P49916 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIG3P49916 AL513327.3-201ENST00000602618 469 ntBASIC5.89□□□□□ -1.47
LIG3P49916 BNIP3P10-201ENST00000605360 577 ntBASIC5.89□□□□□ -1.47
LIG3P49916 AC121334.2-201ENST00000605387 271 ntBASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms