Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC245517.2-201ENST00000442890 346 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXC4P09017 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXC4P09017 RPS15AP29-201ENST00000445539 400 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC4P09017 RNU7-170P-201ENST00000459303 61 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 HMGB1P47-201ENST00000511281 589 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC4P09017 RNA5SP208-201ENST00000516156 78 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 RN7SKP209-201ENST00000516888 304 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC4P09017 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC4P09017 GTF2IP22-201ENST00000554443 182 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC4P09017 VN1R84P-201ENST00000593697 235 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 MIMT1-201ENST00000597105 1050 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 AL391001.1-201ENST00000602747 715 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 AL034351.1-201ENST00000605288 668 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 AC092354.2-201ENST00000607786 514 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXC4P09017 AL512506.1-201ENST00000613918 449 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 AC116563.2-201ENST00000624751 535 ntBASIC3.64□□□□□ -1.83
HOXC4P09017 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXC4P09017 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HOXC4P09017 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXC4P09017 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXC4P09017 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
HOXC4P09017 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC4P09017 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC4P09017 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC4P09017 RNU1-87P-201ENST00000363727 170 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXC4P09017 RNU6-152P-201ENST00000384037 107 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC009237.5-201ENST00000414271 501 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 RPS24P8-201ENST00000431490 402 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 HSPD1P21-201ENST00000436541 245 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 ANP32BP2-201ENST00000454525 545 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 RPL7P48-201ENST00000461513 746 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC006511.1-201ENST00000470614 315 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 TRBV12-2-201ENST00000489763 344 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC4P09017 CAB39P1-201ENST00000502277 460 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 AC110768.1-201ENST00000509222 400 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC4P09017 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 IGKV2D-19-201ENST00000523346 262 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC4P09017 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXC4P09017 CCNG2P1-201ENST00000549521 1000 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXC4P09017 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC4P09017 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC4P09017 AL049870.4-201ENST00000555741 486 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXC4P09017 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXC4P09017 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXC4P09017 ABI1P1-201ENST00000603375 1120 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 MIR7973-1-201ENST00000614683 76 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 U7.8-201ENST00000619968 63 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 AC000123.2-201ENST00000623124 461 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC4P09017 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC4P09017 AC106858.1-201ENST00000637497 429 ntBASIC3.63□□□□□ -1.83
HOXC4P09017 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC4P09017 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC4P09017 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.63□□□□□ -1.83
HOXC4P09017 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC4P09017 USP8P1-201ENST00000494673 3183 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXC4P09017 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC4P09017 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC4P09017 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXC4P09017 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC4P09017 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC4P09017 RNU6-185P-201ENST00000384421 107 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 MIR7-3-201ENST00000384898 110 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXC4P09017 MTHFD2P2-201ENST00000407725 247 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 RNU2-65P-201ENST00000410162 185 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AC069157.1-201ENST00000421749 137 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 FAR1P1-201ENST00000427163 934 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AL365396.1-201ENST00000430854 671 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AL356535.1-201ENST00000440335 398 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AC092809.1-201ENST00000441469 474 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC4P09017 YWHAQP9-201ENST00000445891 512 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC4P09017 AC073387.1-201ENST00000453261 709 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AC099563.1-201ENST00000456086 418 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 AP002345.1-201ENST00000456493 928 ntBASIC3.62□□□□□ -1.83
HOXC4P09017 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC4P09017 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXC4P09017 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms