Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.97□□□□□ -1.77
LMX1BO60663 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.97□□□□□ -1.77
LMX1BO60663 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LMX1BO60663 AC025263.3-201ENST00000622965 1396 ntBASIC3.97□□□□□ -1.77
LMX1BO60663 AC083843.3-201ENST00000623679 2186 ntBASIC3.97□□□□□ -1.77
LMX1BO60663 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LMX1BO60663 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LMX1BO60663 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
LMX1BO60663 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LMX1BO60663 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.97□□□□□ -1.77
LMX1BO60663 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
LMX1BO60663 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
LMX1BO60663 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
LMX1BO60663 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.96□□□□□ -1.77
LMX1BO60663 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.96□□□□□ -1.78
LMX1BO60663 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 SNORD65.1-201ENST00000390889 71 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL121978.1-201ENST00000402778 359 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL031577.2-201ENST00000404133 280 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL034374.1-201ENST00000406329 351 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 RNU6-77P-201ENST00000410554 91 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 RNU4-25P-201ENST00000410569 230 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 RN7SKP247-201ENST00000411094 308 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC105402.1-201ENST00000413336 545 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 NPM1P11-201ENST00000417106 855 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC007435.1-201ENST00000421086 415 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC006366.1-201ENST00000422002 759 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 RPL12P34-201ENST00000424532 479 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 RPS3AP44-201ENST00000425466 790 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 OR5BE1P-201ENST00000425977 939 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 MTCO1P3-201ENST00000429327 192 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 RPS24P1-201ENST00000438550 371 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 MTCO2P3-201ENST00000442543 421 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.96□□□□□ -1.78
LMX1BO60663 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 RPS27AP15-201ENST00000447672 466 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 RPL7P48-201ENST00000461513 746 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 GAPDHP39-201ENST00000481866 979 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC147055.4-201ENST00000504399 745 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC079395.1-201ENST00000510981 262 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 HMGB3P13-201ENST00000511263 607 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 IGJP1-201ENST00000522682 475 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 MTCYBP20-201ENST00000524239 1129 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
LMX1BO60663 UBE2NP1-201ENST00000545592 458 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 AGGF1P4-201ENST00000568249 801 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AP005119.2-201ENST00000579735 1105 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 RSL24D1P11-201ENST00000591045 491 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 WISP1-OT1-201ENST00000602893 642 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC018714.1-201ENST00000605028 208 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC069545.1-201ENST00000605671 358 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AP002360.3-201ENST00000607673 710 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC005962.2-201ENST00000611427 652 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 AC090246.1-201ENST00000616499 426 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 OR5BE1P-202ENST00000641168 1176 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
LMX1BO60663 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.96□□□□□ -1.78
LMX1BO60663 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
LMX1BO60663 AC107021.2-201ENST00000567714 2095 ntBASIC3.96□□□□□ -1.78
LMX1BO60663 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LMX1BO60663 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
LMX1BO60663 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 AL592148.3-201ENST00000608771 2646 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
LMX1BO60663 Y_RNA.126-201ENST00000363382 111 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms