Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPS29P7-201ENST00000439662 171 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 RPS26P30-201ENST00000443431 335 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC015724.1-201ENST00000478577 156 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC079203.1-201ENST00000487972 404 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 RN7SL604P-201ENST00000492589 296 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC010460.1-201ENST00000507087 466 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC118282.2-201ENST00000508739 374 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC093752.1-206ENST00000511823 336 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC111188.2-201ENST00000529697 1387 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC138393.1-206ENST00000540997 1886 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC006064.5-201ENST00000541782 248 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC084757.1-201ENST00000559987 490 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 SLC25A36P1-201ENST00000590111 465 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AP004247.3-201ENST00000608682 624 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC006133.1-201ENST00000617106 264 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC123767.1-202ENST00000620407 817 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 OR1S1-201ENST00000624470 978 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC008013.2-202ENST00000637965 364 ntBASIC4.08□□□□□ -1.76
CCDC3Q9BQI4 AC007529.1-201ENST00000418574 2178 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 OR11H4-201ENST00000315409 1082 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 RNU6-619P-201ENST00000365146 108 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 SNORD66.1-201ENST00000391230 76 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 HDGFP1-201ENST00000405943 252 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 RPL31P52-201ENST00000407532 367 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 RPS12P5-201ENST00000423449 371 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 OR8F1P-201ENST00000425243 930 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 UBE2V1P5-201ENST00000440070 405 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 EXOSC3P1-201ENST00000448649 500 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC239809.1-201ENST00000450470 217 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 PRDX3P4-201ENST00000470828 747 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 DEFB109F-201ENST00000491870 277 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AP002812.1-201ENST00000495378 474 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC010460.2-201ENST00000509054 677 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC021146.3-201ENST00000511911 260 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 FTH1P21-201ENST00000512179 511 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 SNORD116-26-201ENST00000516006 96 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 SNORA67.7-201ENST00000516664 135 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 PHBP17-201ENST00000528576 541 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AL049838.1-201ENST00000563647 981 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 BPTFP1-201ENST00000579209 492 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 MIR4716-201ENST00000579628 84 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 BNIP3P22-201ENST00000593399 556 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 PCNAP1-202ENST00000595299 752 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AL138478.1-201ENST00000612252 832 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AL158196.1-201ENST00000616786 434 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AC019278.1-201ENST00000623516 479 ntBASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC3Q9BQI4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms