Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC025031.4-201ENST00000621248 3271 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MTND4P8-201ENST00000514997 1362 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP28-201ENST00000363841 119 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP428-201ENST00000365129 132 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 MIR153-1-201ENST00000384914 90 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AF228730.1-201ENST00000397972 663 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 ARL4AP5-201ENST00000404372 599 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AL133264.1-201ENST00000407157 562 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 ELOCP19-201ENST00000411919 318 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 DPRXP1-201ENST00000426312 460 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 RHOT1P3-201ENST00000436571 331 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 HMGB1P48-201ENST00000446155 598 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 FGF7P3-201ENST00000454645 303 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 RPS15AP1-201ENST00000457423 391 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 MTCYBP35-201ENST00000503630 1137 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC005351.1-201ENST00000511152 786 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP143-201ENST00000516936 115 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 GCSHP4-201ENST00000538792 439 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 SERPINE4P-201ENST00000554978 281 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC061975.8-201ENST00000587058 721 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AP001269.3-201ENST00000588718 329 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AL139286.1-201ENST00000604465 483 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 MEMO1P5-201ENST00000604810 406 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 COX6CP4-201ENST00000605798 228 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 HSPE1P14-201ENST00000605812 302 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC007349.4-201ENST00000608114 532 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 AC023043.4-201ENST00000612081 449 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 MIR6864-201ENST00000617935 70 ntBASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PDLIM3Q53GG5 DHX40P1-201ENST00000588725 1412 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL136164.3-201ENST00000624429 3978 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 OR56B2P-201ENST00000317102 954 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 IL6STP1-201ENST00000346911 1020 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 MIR208A-201ENST00000362287 71 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL357515.1-201ENST00000402967 542 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL590084.1-201ENST00000407885 387 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RN7SKP100-201ENST00000411258 284 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 CYCSP10-201ENST00000417973 294 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 KRR1P1-201ENST00000419430 803 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC010881.1-201ENST00000433830 235 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC092393.1-201ENST00000439625 742 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RPL23AP76-201ENST00000441860 458 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 Z73417.1-201ENST00000447373 778 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 OR1H1P-201ENST00000448731 937 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 MTND2P28-201ENST00000457540 1044 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RPL21P71-201ENST00000465598 459 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RPS20P21-201ENST00000466859 343 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC068587.2-201ENST00000478386 781 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 GAPDHP56-201ENST00000506031 988 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms