Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 MTND4LP3-201ENST00000468320 276 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AK3P4-201ENST00000504283 583 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 Y_RNA.655-201ENST00000515919 96 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 NPM1P6-201ENST00000521088 871 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AL390838.2-201ENST00000602394 274 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 BPIFA4P-203ENST00000603168 689 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC122108.2-201ENST00000611946 526 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 AC004223.4-201ENST00000612426 332 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 AL390862.1-201ENST00000635467 1469 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SMARCA1P28370 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 RNA5SP332-201ENST00000391063 115 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 RNU6-272P-201ENST00000411028 104 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 RPS20P1-201ENST00000434853 354 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 PPIAP17-201ENST00000438507 471 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC004865.1-201ENST00000442276 1003 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.27□□□□□ -1.57
SMARCA1P28370 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AC108751.2-201ENST00000469993 231 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 RN7SL738P-201ENST00000470264 297 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.27□□□□□ -1.57
SMARCA1P28370 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC111000.3-201ENST00000508057 576 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.27□□□□□ -1.57
SMARCA1P28370 HNRNPKP5-201ENST00000515300 253 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 RNA5SP446-201ENST00000515955 82 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 HIGD1AP6-201ENST00000521833 279 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SMARCA1P28370 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC5.27□□□□□ -1.57
SMARCA1P28370 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 NF1P5-201ENST00000588287 448 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC005191.1-201ENST00000603950 358 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AL451086.1-201ENST00000605596 223 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AC124312.6-202ENST00000623624 418 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AC007494.3-201ENST00000624660 743 ntBASIC5.27□□□□□ -1.57
SMARCA1P28370 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
SMARCA1P28370 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SMARCA1P28370 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.27□□□□□ -1.57
SMARCA1P28370 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.26□□□□□ -1.57
SMARCA1P28370 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.26□□□□□ -1.57
SMARCA1P28370 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 AC087359.1-201ENST00000508335 1740 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 AC114546.3-201ENST00000623582 1734 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.26□□□□□ -1.57
SMARCA1P28370 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 CYP1D1P-201ENST00000416662 1433 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SMARCA1P28370 Y_RNA.51-201ENST00000362725 102 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 Y_RNA.201-201ENST00000364052 96 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 Y_RNA.311-201ENST00000365068 96 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 AL133264.1-201ENST00000407157 562 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 MIR1271-201ENST00000408537 86 ntBASIC5.26□□□□□ -1.57
SMARCA1P28370 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms